Entry information : CclPrx119 ( clementine0.9_035853m)
Entry ID 8680
Creation 2011-06-25 (Qiang Li)
Last sequence changes 2012-01-04 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-14 (Christophe Dunand)
Peroxidase information: CclPrx119 ( clementine0.9_035853m)
Name (synonym) CclPrx119 ( clementine0.9_035853m)
Class Class III peroxidase     [Orthogroup: Prx041]*
Taxonomy Eukaryota Viridiplantae Streptophyta Rutaceae Citrus
Organism Citrus clementina    [TaxId: 85681 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CclPrx119
start..stop
S start..stop
CsPrx[P]64 537 0 1..337 1..319
PpePrx23 375 7e-131 4..337 1..332
CsaPrx88 359 2e-124 1..337 1..331
PtPrx83 351 3e-121 28..337 33..337
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1054401..1054616 216 N° 2 1054743..1054949 207 N° 3 1055338..1055503 166 N° 4 1055610..1056031 422
join(1054401..1054616,1054743..1054949,1055338..1055503,1055610..1056031)


exon

Literature and cross-references CclPrx119 ( clementine0.9_035853m)
DNA ref. Phytozome 12:   scaffold_61 (1054401..1056031)
Protein sequence: CclPrx119 ( clementine0.9_035853m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   335 (312)
PWM (Da):   %s   38188.91 (35510.4)  
PI (pH):   %s   9.08 (8.81) Peptide Signal:   %s   cut: 24 range:24-335
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MENIRILLLIVLMFMLHGRKISGEGDGVLVQDYYKETCPLAEEIIRRIVENAVVKDPRMAASLLRLHFHDCFIAARDAVALVCNVTLSTFRFVDIRAYSTLNLKAYLTFLIPERISKRRSRLCHCLYSADYNKLRCFGMRIRGGLTWKVLLGRTDSLKASFDGAKKYIPFPNSSLETLIANFEHQGLDIRDLVALSGSHTIGEARCLSFRQSIYDVNIKEEHYDKYKI*TTFRRIVRSICPESGRDNEVAPLDYTTPARFGNH*YLNILRGRGLLPSDNLLVTQDHRQGEIIQLVWAHASDQQFFCDSFVNSIVKVGKINVLTGHHGQIRNDCRFV

Retrieve as FASTA  
Remarks Pseudogene sequence from genomic. Incorrect prediction from phytozome(Short 5' end and some short seqs in frame are missing which have been completed manually).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGAATATAAGGATACTATTGTTGATTGTATTGATGTTCATGTTGCATGGAAGAAAGATTTCGGGTGAAGGTGATGGAGTTCTTGTTCAGGATTACTACAAAGAGACATGCCCCTTA
GCAGAAGAGATTATCAGACGTATTGTCGAGAATGCCGTGGTTAAAGATCCTCGCATGGCAGCATCACTCCTACGCTTGCACTTTCATGATTGCTTT
CTCATGGTTACATTTGATCCCATC
ATCTCTCTTATCTGTGTGAGGATTCGAAGTGATTGATGAGATCAAGTTCATTTTAGAAGATGCATGTCCCCACACAATTTCATGTGCTCTGATATTCTAACCATTGCCGCTCGTGATGCT
GTTGCTTTGGTATGTAATGTAACTCTCTCCACATTTCGTTTTGTAGATATTCGTGCATATTCAACATTAAATCTGAAAGCGTACCTAACCTTTTTGATCCCCGAACGCATCTCCAAACGC
AGAAGCAGGTTATGTCACTGTCTCTATTCAGCGGATTACAATAAGTTACGTTGCTTTGGCATGAGAATT
TAAGGAAAAATCCTCATGCCAATGTATGTTTATGCCAATGTTTATCGATTC
GATCCGAGATCTATTATTGTATGTTTAGCCAATGTTTGTTGGGATATTACTATCGATTCGATAGCTATTATTGTATTTTCTAATACGTTATATATACTTCCATGTCTTATATAAACTTCC
ATGTCTCTCACATACAAAATTTAGGTACAATATGTGTATTTATATAAAAGCTAATGTAAGTGATAGAAGTTAAAATAAAAGACTTCATAACTCTTAGAGTTCAATTAGACTTGCAATAAT
GATATAGATTGTTGTTTATGTTCGGCCGGGCCAACTCCAATGCTTCTCTTACAAGTTTAGTGATATACTTACAAGCCTCTGACTTTTATATTATCAGAGAGGAGGACTGACATGGAAGGT
CTTGCTTGGAAGGACAGATTCACTGAAAGCGAGCTTTGACGGAGCCAAAAAGTACATTCCTTTTCCCAATTCCTCTCTGGAGACTCTTATTGCAAATTTTGAACATCAAGGTCTTGACAT
TAGAGACTTGGTTGCTTTATCAG
GTTCAATCAAAATAATGTGAATTAACAAGCCACTATCTTACATCCCAAGTTTCAAATTTTGTGGTAAAATGTTGAAATTGACTTGAAAAAAATAAAC
TGTCAATAGGTAGCCACACAATTGGTGAGGCAAGATGTCTGAGCTTCAGGCAAAGTATCTATGACGTTAACATTAAAGAAGAACATTATGATAAATACAAAATATAAACAACATTTCGGA
GAATCGTACGGTCCATATGCCCTGAATCAGGAAGAGATAACGAAGTGGCGCCGCTTGATTATACGACTCCTGCAAGGTTTGGCAATCATTAGTACCTCAACATTCTTCGAGGAAGAGGTC
TGCTGCCATCAGATAATCTACTAGTGACTCAAGACCATCGTCAAGGAGAAATAATTCAGCTAGTGTGGGCACATGCCTCTGATCAACAATTCTTCTGTGATTCATTTGTAAATTCTATTG
TCAAGGTGGGAAAGATAAATGTACTCACTGGCCACCACGGGCAAATCAGGAACGACTGTAGGTTTGTCAAT

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGAATATAAGGATACTATTGTTGATTGTATTGATGTTCATGTTGCATGGAAGAAAGATTTCGGGTGAAGGTGATGGAGTTCTTGTTCAGGATTACTACAAAGAGACATGCCCCTTA
GCAGAAGAGATTATCAGACGTATTGTCGAGAATGCCGTGGTTAAAGATCCTCGCATGGCAGCATCACTCCTACGCTTGCACTTTCATGATTGCTTT
ATTGCCGCTCGTGATGCTGTTGCT
TTGGTATGTAATGTAACTCTCTCCACATTTCGTTTTGTAGATATTCGTGCATATTCAACATTAAATCTGAAAGCGTACCTAACCTTTTTGATCCCCGAACGCATCTCCAAACGCAGAAGC
AGGTTATGTCACTGTCTCTATTCAGCGGATTACAATAAGTTACGTTGCTTTGGCATGAGAATT
AGAGGAGGACTGACATGGAAGGTCTTGCTTGGAAGGACAGATTCACTGAAAGCGAGC
TTTGACGGAGCCAAAAAGTACATTCCTTTTCCCAATTCCTCTCTGGAGACTCTTATTGCAAATTTTGAACATCAAGGTCTTGACATTAGAGACTTGGTTGCTTTATCAG
GTAGCCACACA
ATTGGTGAGGCAAGATGTCTGAGCTTCAGGCAAAGTATCTATGACGTTAACATTAAAGAAGAACATTATGATAAATACAAAATATAAACAACATTTCGGAGAATCGTACGGTCCATATGC
CCTGAATCAGGAAGAGATAACGAAGTGGCGCCGCTTGATTATACGACTCCTGCAAGGTTTGGCAATCATTAGTACCTCAACATTCTTCGAGGAAGAGGTCTGCTGCCATCAGATAATCTA
CTAGTGACTCAAGACCATCGTCAAGGAGAAATAATTCAGCTAGTGTGGGCACATGCCTCTGATCAACAATTCTTCTGTGATTCATTTGTAAATTCTATTGTCAAGGTGGGAAAGATAAAT
GTACTCACTGGCCACCACGGGCAAATCAGGAACGACTGTAGGTTTGTCAAT

Retrieve as FASTA