Entry information : SbPrx92 (Sobic.006G110700.1 [2.1] / Sb06g019280 [1.4])
Entry ID 875
Creation 2007-11-12 (Christophe Dunand)
Last sequence changes 2011-01-21 (Toky Ramarohetra)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx92 (Sobic.006G110700.1 [2.1] / Sb06g019280 [1.4])
Name (synonym) SbPrx92 (Sobic.006G110700.1 [2.1] / Sb06g019280 [1.4])
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Callus
Cell culture
Seedlings
Inducer Heat shock stress
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx92
start..stop
S start..stop
SiPrx52 538 0 36..345 33..336
ZmPrx111 491 2e-176 35..345 30..334
BdiPrx129 489 1e-175 36..345 30..333
OsPrx55 488 3e-175 38..344 35..335
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 48859328..48860365 1038  
complement(join(48859328..48860365))


exon

Literature and cross-references SbPrx92 (Sobic.006G110700.1 [2.1] / Sb06g019280 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_6 (48860364..48859328)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.32299.1 UniGene:   Sbi.2272
Protein sequence: SbPrx92 (Sobic.006G110700.1 [2.1] / Sb06g019280 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   345 (323)
PWM (Da):   %s   36562.85 (34256.5)  
PI (pH):   %s   10.04 (9.90) Peptide Signal:   %s   cut: 23 range:23-345
Sequence
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Send to Peroxiscan
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MGAPLLRRRL LLSLALLAAC CAAVGTAAAA KAKAPRLSPN YYRHSCPRVQ RIVSDVIAAK QRANPSTAAG TLRLFFHDCF VNGCDASVLV SPLSSTAAPE RRREITLSLP GDAFDAVARA  KAALESACPG VVSCADVLAL AARDLVGILG GPRFPVALGR RDSARSEARD VEGNLPRTNM SARAMVRLFA GKGLSAREMV ALAGAHTVGF SHCAEFAHRI YGYRGPGAAG AGAGHDPRLN 
PEFARALQRS CAGYRTDPTV SIFNDIVTPS EFDEAYYKNL PHGLGLLASD AAIWEYPPTR VFAQRYSANR TAFFEDFAAA MQRLGAVGVK TGRQGVVRRR CDALD 

Retrieve as FASTA  
Remarks Complete sequence from DNA (no intron) and 8 ESTs. 1 base is missing in phytozome version (cf ESTs).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGCGCGC CGCTGCTCCG CCGCCGCCTC CTGCTGTCCC TCGCGCTCCT GGCCGCCTGC TGCGCCGCGG TGGGGACAGC GGCGGCGGCG AAAGCGAAAG CGCCCAGGCT GTCGCCCAAC  TACTACCGCC ACAGCTGCCC GCGGGTGCAG CGGATCGTGT CGGACGTCAT CGCGGCGAAG CAGCGCGCCA ACCCGTCGAC GGCGGCGGGC ACGCTGCGGC TCTTCTTCCA CGACTGCTTC  GTCAACGGCT GCGACGCCTC CGTGCTGGTC TCCCCGCTCT CCTCCACCGC GGCCCCGGAG CGCCGGCGGG AGATCACCCT CTCCCTGCCC GGGGACGCGT TCGACGCCGT GGCCCGCGCC  AAGGCGGCGC TGGAGTCCGC CTGCCCCGGC GTGGTGTCCT GCGCCGACGT CCTGGCGCTG GCGGCGCGGG ACCTCGTGGG GATCCTTGGC GGGCCACGGT TCCCCGTCGC GCTGGGCCGC  CGCGACTCCG CCCGCTCCGA GGCGCGCGAC GTGGAGGGCA ACCTGCCACG CACCAACATG TCGGCGCGCG CCATGGTGCG GCTCTTCGCG GGCAAGGGGC TCTCGGCCCG GGAGATGGTG  GCGCTGGCCG GCGCCCACAC CGTGGGCTTC TCCCACTGCG CCGAGTTCGC GCACCGCATC TACGGATACC GGGGCCCGGG CGCCGCCGGC GCCGGGGCCG GCCACGACCC GCGGCTCAAC  CCGGAGTTCG CCCGCGCGCT GCAGCGCTCC TGCGCGGGGT ACCGGACCGA CCCCACCGTC TCCATCTTCA ACGACATCGT CACGCCCAGT GAGTTCGACG AGGCATACTA CAAGAACCTG  CCCCACGGGC TGGGCCTGCT CGCCTCCGAC GCCGCCATCT GGGAGTACCC GCCCACCAGG GTGTTCGCGC AGCGGTACTC CGCCAACCGC ACCGCCTTCT TCGAGGACTT CGCCGCCGCC 
ATGCAGAGGC TCGGCGCCGT CGGCGTCAAG ACCGGGCGCC AGGGCGTCGT CAGACGCCGC TGCGACGCGC TCGACTGA 

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CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGCGCGC CGCTGCTCCG CCGCCGCCTC CTGCTGTCCC TCGCGCTCCT GGCCGCCTGC TGCGCCGCGG TGGGGACAGC GGCGGCGGCG AAAGCGAAAG CGCCCAGGCT GTCGCCCAAC  TACTACCGCC ACAGCTGCCC GCGGGTGCAG CGGATCGTGT CGGACGTCAT CGCGGCGAAG CAGCGCGCCA ACCCGTCGAC GGCGGCGGGC ACGCTGCGGC TCTTCTTCCA CGACTGCTTC  GTCAACGGCT GCGACGCCTC CGTGCTGGTC TCCCCGCTCT CCTCCACCGC GGCCCCGGAG CGCCGGCGGG AGATCACCCT CTCCCTGCCC GGGGACGCGT TCGACGCCGT GGCCCGCGCC  AAGGCGGCGC TGGAGTCCGC CTGCCCCGGC GTGGTGTCCT GCGCCGACGT CCTGGCGCTG GCGGCGCGGG ACCTCGTGGG GATCCTTGGC GGGCCACGGT TCCCCGTCGC GCTGGGCCGC  CGCGACTCCG CCCGCTCCGA GGCGCGCGAC GTGGAGGGCA ACCTGCCACG CACCAACATG TCGGCGCGCG CCATGGTGCG GCTCTTCGCG GGCAAGGGGC TCTCGGCCCG GGAGATGGTG  GCGCTGGCCG GCGCCCACAC CGTGGGCTTC TCCCACTGCG CCGAGTTCGC GCACCGCATC TACGGATACC GGGGCCCGGG CGCCGCCGGC GCCGGGGCCG GCCACGACCC GCGGCTCAAC  CCGGAGTTCG CCCGCGCGCT GCAGCGCTCC TGCGCGGGGT ACCGGACCGA CCCCACCGTC TCCATCTTCA ACGACATCGT CACGCCCAGT GAGTTCGACG AGGCATACTA CAAGAACCTG  CCCCACGGGC TGGGCCTGCT CGCCTCCGAC GCCGCCATCT GGGAGTACCC GCCCACCAGG GTGTTCGCGC AGCGGTACTC CGCCAACCGC ACCGCCTTCT TCGAGGACTT CGCCGCCGCC 
ATGCAGAGGC TCGGCGCCGT CGGCGTCAAG ACCGGGCGCC AGGGCGTCGT CAGACGCCGC TGCGACGCGC TCGACTGA 

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