Entry information : CsaPrx13 (Cucsa.000280.1)
Entry ID 8807
Creation 2011-06-29 (Qiang Li)
Last sequence changes 2011-10-03 (Qiang Li)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-01-04 (Qiang LI)
Peroxidase information: CsaPrx13 (Cucsa.000280.1)
Name (synonym) CsaPrx13 (Cucsa.000280.1)
Class Class III peroxidase    [Orthogroup: Prx008]
Taxonomy Eukaryota Viridiplantae Streptophyta Cucurbitaceae Cucumis
Organism Cucumis sativus    [TaxId: 3659 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CsaPrx13
start..stop
S start..stop
CsaPrx12 542 0 15..313 17..315
CsaPrx14 467 2e-167 12..313 23..325
CclPrx07 464 2e-166 1..313 8..323
CsPrx15 464 2e-166 1..313 8..323
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 53187..53384 198 N° 2 53506..53697 192 N° 3 53820..53985 166 N° 4 54082..54467 386
join(53187..53384,53506..53697,53820..53985,54082..54467)


exon

Literature and cross-references CsaPrx13 (Cucsa.000280.1)
DNA ref. Phytozome 12:   scaffold00009 (53187..54467)
Protein sequence: CsaPrx13 (Cucsa.000280.1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   313 (294)
PWM (Da):   %s   34218.36 (32284.3)  
PI (pH):   %s   7.41 (7.41) Peptide Signal:   %s   cut: 20 range:20-313
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVLTLVLALLVMFTGSSSAQLSTNFYYKTCPKLLNTVRAGIHSAVAKEARMGASLLRLHFHDCFVNGCDGSILLEDTPTFTGEQTAAPNNRSVRGFDVIESIKKNVEKICPGVVSCADILTLSARDSVVVLGGPSWKVKLGRRDSKTASFSDVTGAIPPPTSTLDTLINRFNTKGLSPRDLVALSGAHTIGQARCLFFKNRIYNETNIDESFAEERQRTCPTNGGDDNRAPLDFKTPKLFDNYYYKNLLEKKALLRSDQVLHDGGSTDSLVELYSDDSDTFEHDFVTAMIKMGDIQPLTGSQGEIRKICSRPN

Retrieve as FASTA  
Remarks Complete sequence from genomic. Incorrect prediction from phytozome (3' end is missing which has been completed).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTTTGACTTTAGTATTAGCGTTGTTGGTCATGTTTACCGGCAGCTCTTCAGCTCAGCTCTCTACTAACTTTTACTATAAGACTTGTCCCAAGCTCCTTAACACGGTTAGAGCTGGT
ATTCACTCTGCTGTGGCTAAGGAAGCACGCATGGGCGCTTCACTTCTTCGCCTTCACTTTCACGACTGTTTTGTTAAT
GTATACACACTTTTAATTTTTCTATTTTTTTTATTGCATTTT
CATATATATATGTATACTTTACCCTTCATTTAATTTGTTTTCATTTTATATACATGGAAACAATATTATTATCTTTCAGGGTTGTGATGGATCGATTCTTTTGGAAGATACTCCTACGTT
TACAGGAGAGCAAACAGCAGCTCCCAACAATAGATCTGTTAGAGGTTTTGACGTGATTGAGAGCATAAAGAAAAATGTAGAAAAAATTTGTCCTGGTGTTGTCTCATGTGCTGATATTTT
GACTCTTTCTGCTCGTGACTCTGTTGTAGTG
GTGAGTTACTAATTTGTTGATTATGCCAACTTAATTATCAAAACTTTGTACATTATGTAACTTGTTTTAGTTTGAGTATTGGATGATGT
TGACTTACAACTTTTACCAATTAATTATTATAGCTTGGAGGGCCAAGTTGGAAGGTAAAATTAGGAAGAAGAGATTCTAAAACAGCCAGCTTCTCTGATGTCACTGGTGCTATTCCTCCG
CCAACCTCAACTCTTGACACCCTTATCAATCGATTCAACACAAAAGGCCTCTCCCCACGAGACTTGGTTGCCTTATCTG
GTACTATATATATCAACCATGATGTTGTTTGTAACATATGA
TATGATCTTTTATACTAATCGTATCATACTTTATTGAATGTAATATATAATGTAGGGGCTCACACAATTGGACAAGCAAGATGTTTGTTTTTCAAGAACCGTATATACAATGAGACCAAC
ATTGATGAGTCATTTGCTGAAGAGAGACAAAGGACTTGCCCAACGAATGGAGGAGATGACAATCGTGCCCCTTTAGACTTCAAAACTCCAAAGCTTTTTGACAATTACTACTACAAAAAC
CTCTTGGAGAAGAAGGCTTTGCTTCGGTCCGATCAAGTGCTCCACGACGGCGGATCCACTGATTCATTGGTTGAACTTTACAGCGATGACAGTGATACCTTTGAACATGATTTTGTTACA
GCTATGATTAAAATGGGCGACATTCAACCGCTCACTGGATCACAAGGTGAGATTCGTAAGATTTGCAGCCGACCCAATTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTTTGACTTTAGTATTAGCGTTGTTGGTCATGTTTACCGGCAGCTCTTCAGCTCAGCTCTCTACTAACTTTTACTATAAGACTTGTCCCAAGCTCCTTAACACGGTTAGAGCTGGT
ATTCACTCTGCTGTGGCTAAGGAAGCACGCATGGGCGCTTCACTTCTTCGCCTTCACTTTCACGACTGTTTTGTTAAT
GGTTGTGATGGATCGATTCTTTTGGAAGATACTCCTACGTTT
ACAGGAGAGCAAACAGCAGCTCCCAACAATAGATCTGTTAGAGGTTTTGACGTGATTGAGAGCATAAAGAAAAATGTAGAAAAAATTTGTCCTGGTGTTGTCTCATGTGCTGATATTTTG
ACTCTTTCTGCTCGTGACTCTGTTGTAGTG
CTTGGAGGGCCAAGTTGGAAGGTAAAATTAGGAAGAAGAGATTCTAAAACAGCCAGCTTCTCTGATGTCACTGGTGCTATTCCTCCGCCA
ACCTCAACTCTTGACACCCTTATCAATCGATTCAACACAAAAGGCCTCTCCCCACGAGACTTGGTTGCCTTATCTG
GGGCTCACACAATTGGACAAGCAAGATGTTTGTTTTTCAAGAAC
CGTATATACAATGAGACCAACATTGATGAGTCATTTGCTGAAGAGAGACAAAGGACTTGCCCAACGAATGGAGGAGATGACAATCGTGCCCCTTTAGACTTCAAAACTCCAAAGCTTTTT
GACAATTACTACTACAAAAACCTCTTGGAGAAGAAGGCTTTGCTTCGGTCCGATCAAGTGCTCCACGACGGCGGATCCACTGATTCATTGGTTGAACTTTACAGCGATGACAGTGATACC
TTTGAACATGATTTTGTTACAGCTATGATTAAAATGGGCGACATTCAACCGCTCACTGGATCACAAGGTGAGATTCGTAAGATTTGCAGCCGACCCAATTGA

Retrieve as FASTA