Entry information : SbPrx62 (Sobic.003G152100.1 [2.1] / SB03G013210 [1.4])
Entry ID 886
Creation 2006-01-03 (Christophe Dunand)
Last sequence changes 2006-01-03 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx62 (Sobic.003G152100.1 [2.1] / SB03G013210 [1.4])
Name (synonym) SbPrx62 (Sobic.003G152100.1 [2.1] / SB03G013210 [1.4])
Class Class III peroxidase    [Orthogroup: Prx072]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Leaves
Ovaries
Roots
Inducers Acid treatment
Alkaline treatment
Dark growth
Drought
Light growth
Oxidative stress
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx62
start..stop
S start..stop
ZmPrx49 614 0 6..357 1..355
BdiPrx66 517 0 6..357 1..355
TaPrx46 490 1e-175 9..348 3..344
TmPrx08 489 5e-175 9..348 3..344
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 16173165..16173404 240 N° 2 16176657..16177490 834  
join(16173165..16173404,16176657..16177490)


exon

Literature and cross-references SbPrx62 (Sobic.003G152100.1 [2.1] / SB03G013210 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_3 (16173165..16177490)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.30474.1
Protein sequence: SbPrx62 (Sobic.003G152100.1 [2.1] / SB03G013210 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   357 (324)
PWM (Da):   %s   37603.93 (34409.4) Transmb domain:   %s   i7-29o
PI (pH):   %s   6.35 (6.03) Peptide Signal:   %s   cut: 34 range:34-357
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAGERMSTSSGGFAGLVACVATVCLLLPTGSRAQLKVGFYNTTCPNAEALVRQVVTAAFANNSGVAPGLIRLHFHDCFVRGCDASVLLSVNPAGGNTERQSRANNPSLRGFDVIDAAKAAVERSCPRTVSCADIVAFAARDSVNLTGKLFYQVPAGRRDGRVSNETEADTNLLGPDSTAQVLIDGFRRKNLTVEDMVVLSGSHTIGRSHCASFLATNRRRLADGTISAAYQALLEALCPPSPGQFDPNTTEIDVSTPAVLDNNYYKLLPLNLGLHFSDDQLIRNATLAPLANAFAADETLWKQKFAAAMVKMGNIDVKTGTTDEIRLNCSVVNPSSSSAAAAGVIEMLFPADEVATS*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, intron 1) and 17 ESTs (TC102790, 5'is missing) and from 12 EST (TC102791,sequence between FDN and Stop is missing, stop at position 283).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGGAGAGAGGATGAGCACTAGCAGCGGCGGCTTTGCCGGCCTGGTGGCGTGCGTCGCCACCGTGTGCCTGCTGCTGCCGACGGGGAGCCGCGCCCAGCTCAAGGTGGGGTTCTAC
AACACCACCTGCCCCAACGCCGAGGCGCTCGTGCGTCAGGTCGTCACGGCTGCTTTCGCCAACAACTCCGGCGTCGCACCCGGCCTCATCCGCCTCCATTTCCATGACTGCTTTGTCAGG
GTACGTACGTATATACACAATTAAACATGCATGCATGTAAGTGGTGTCTCGGCAGATCACACATGTGCAGTACATGTATAGACTCTACTTGATTTTTTTTCCACGTTTTTCATCTCTACT
ACTTCGTACTTCAGACGAGCTGGTTCACCCAATTCCATTGCCACGGTCGTTCAGTAGTTTTTAATCTAGCGAACAATCCGACAGCTAATGCATGCCGGTCGTCCATCCTTCTCCCACCAC
TTCTCTTTCCCTCTGCTTTTGACATCATCATGAAAAAAATAAAATATTTATTTCAAATTACTATAACTTTTGAATGATGTATCTATTTTTAATTCCGTCTTCACCGGTGTGTTCAACGTG
ACAAGACGAACAAAACTAGACCCCACTTCTATATGTTTCGAGGATTTTTATTTTTCTAATAACAATTTATGTATATAAACTTATAACATATAAGTTATGTTGCTAACTTATTCTGCTAAA
TTATGCTGCTAACCTATTCTGCTAAGTTGTATCGTATAACTTCTGTTTATGTATAATAAATGTCATAACTTTCTATATGCACTAGTGTATTAGTTGTGCAACTTATGTACATAAGTTGTA
TTGTGTAACTTATGTCTCTCTCTATTCTAAATTATAAAATGTTTTGATATTTCTACATATATTGATTTTGTTATGTGTATACATATATAGTTGTGTCTAGATACATACTAAATTCAATTT
AGAAAAGTCAACGTGCCTTATAATTCGAAATAGTGGAAGTAAACTTATGTACATAAGTTATATACTATAACTTTTTGAGAACGACTAAGTTAGCAATGTTAAGTTATTTCTCGAACTTAT
GTTGTCTAGAAGCACTTCTAAGTTAGTACTGTTAAGTTTATCGTGAAAGTTACGCTTTTTTTTAATTCCATTTTATAAGTTATGAGCACATGCTTCTTAAAAAAAATATATTAAAGGGCG
GGTGATCTAGGAAAAGAAAGTGAAAAGAGAATCGAATATCTAAAAAGAGAAAGAGAAACGATTCTTGTTCTGTCCAAAATAAAAAGTAATATATGCACTTTCCAAAAAAGGAAAGAAAAT
AGTTGTCGGAAACTGACCGCTGCTTTTATTTTCACTGAACGTTTGTGAAATAGTGGTGTCGGCTTGTTCATGAGAGATGGAAATATATCTCTCATATAATAATATTCGTCCTGTGAACAA
GGAACCAAAAAGGAAATATAAGGTATAGCATGATCCAACAATAGTTGCGGTAAAACCAAACGTATTAATTTTGACCAATATATTGTAAAGTTAGACACATAAGAGGATGGGAATTCCAAA
AATAATTTTCAACTGAAATCCTCTTGGTATACTCTGTCAGACCAAATATATACAAAAAATTATTAATATTTATAGTACATAATAAATATCGTTAGATTAATTGTTCATATTTTGACAGTA
ACCTTATTTGGAGATATAAATATTGCTAATGTTTTATATAACTGCCCATTTAGATCTTTATCATTCTGGAAAAATTATAATCTACTTTATGAACTAGGCTAGCTATTTGGCTAGCAAATT
TGATATTCCACAACTTTCAAAGTTTAAATATAAACCTGTGTTAAATTCGTGGGTGAAAGATAGAGATAGATATTTCGTCAATTATCATGCCCTGTTTCTGCTTTGCATCTTATACCAAGC
AGAAGTGCGGTGTATAAGTATCTCCCCTCTGTGGCCAACAACAACATACAAATATGTTCCACACGCAGTCATGCTAACTTAACTGATTCGTGCCTAAATTGTGATTATTGGAACGGATTT
TAATTCAAAAACTCAAATGAGACCTAATTCTTCTAGTTAAATTTAAGAAAGCTTGAATTATATACATAACCATAAACAGCATTTTTTGTGGTTTTTGGTATGGATGGCGTAGTGGTTGCG
GCTATTTATTTACAACCAAGTAAATATCTAAATTATTTAATTTGAACAATGGTGCAAAAACTCAAAAACGTTGGCCAATAACATATTTTCCTAAGGCCTTATTTAGATGTCCATGTGTTT
ATCTCAAATTTTCAACCCATGTGTGTTGAAATGGGTTTGTGGGAAATTTAAACTAAACTCTATATACCAACCCACCTCAACGCATACGTCTGAGATGAATACATAGATACCCAAACTAAG
CCCCTAACATGGTCTTCAACATATTGTGAGCCAGAGATTTTTACGTAAAACACTACCAAAATGGTAAAAATCTCCTAGTATTTTTAACTAGTAATAAAACACTATCATTAGTCATATCAC
ATACGAATCTCACTAGGAGACATTTAGTAGGCAAATTTATACTAAATTTTGAATACCAAAACACTAGAAGAATCCCACGTTACTAGGAAAAATCTAAAATTATGGTTGTGAAAGTTCCAT
CAATAATAATAATTTAGTCTGTTCGATCAGTGTAGGTAACAGATAAGGGTTGTTTGTCTCTATCATAAAAATAATCCAAACAAAACTCTAAGCTTCACGGAACACGTGCACATGTCTTGG
TTATCGTTCTCAAACTTTCCTCTCTTGAATAATAGATAGTTCAACAGCAACGAAAGCTCAGTTTGGATCTTGGCAGCATATGCTCCCTCAACTCTTGAATTATATTCTTCATGGATATAT
ATGACATAAACCGTTGAATTATTTTGGAAGAACAAGTCAATTGGTCGTTGGTACACACATAGTACATGAGTACAACCACCACCTAGATAGACCGGCCTGTACTAGCAATATATTGATGCC
GTCCAACAGGTACTATATACTACAATTACGTAGGAGTACTAGTTAAGATTGGTATTAGGCCTTGTTTAGATGCACTAAAAAACCCAAAACTTTATAAGATTCTCCATCACATCGAATCTT
ACGGCACTTGCATGGAATATTAAATATAGATAAAAAAAATAACTAATTGCATAGTTTATCTGTAAATCACGATACGAATCTTTTCAGGCTAGTTACTCTATAATTGGACAATGTTTGTTA
AATAAAAACGAAAGTGCTATAGTGTCAAAATCCAAAAAGTTTTTTATTAAAAAAGGCCTTATCCAACGCACTTGTGGTTTTATATACTGCCAGTCCAAGTCCAGAATGATCAGCGTTGAA
GCATACGCGTGTTATGTTGATGCTTGACAATTAATGTAATGCCACATTTACTAATCATGGTGAGGACTGAAACAGTGAAACCTAATTAAACTTTGGTGGTTGGCTTTTGATGACCCATCA
TTCCACACACAGGGCTGCGACGCCTCCGTCCTCCTATCCGTGAACCCCGCCGGCGGCAACACGGAGCGTCAGTCCCGGGCGAACAACCCGAGCCTGCGCGGCTTCGACGTGATCGACGCC
GCCAAGGCCGCCGTGGAGCGGAGCTGCCCGCGCACCGTCTCGTGCGCCGACATCGTCGCCTTCGCCGCCCGCGACAGCGTCAACCTGACGGGCAAGCTCTTCTACCAGGTGCCCGCGGGG
CGGCGGGACGGCCGCGTGTCCAACGAGACGGAGGCCGACACCAACCTGCTTGGCCCTGACAGCACGGCGCAGGTCCTCATCGACGGCTTCAGGAGGAAGAACCTCACCGTCGAGGACATG
GTGGTGCTGTCGGGCTCCCACACTATCGGCCGCTCCCACTGCGCCTCCTTCCTGGCCACCAACCGCCGCCGGCTGGCCGACGGGACCATCAGCGCGGCGTACCAGGCGCTGCTGGAGGCG
CTGTGCCCGCCCAGCCCCGGCCAGTTCGACCCAAACACGACGGAGATCGACGTCAGCACGCCGGCTGTGCTGGACAACAACTACTACAAGCTGCTGCCGCTCAACCTCGGCCTCCACTTC
TCCGACGACCAGCTCATCCGCAACGCCACGCTCGCGCCGCTCGCCAACGCCTTCGCCGCCGACGAGACGCTCTGGAAGCAGAAGTTCGCCGCCGCCATGGTCAAGATGGGCAACATCGAC
GTCAAGACCGGCACCACGGATGAGATCCGCCTCAACTGCAGCGTCGTCAACCCGTCCTCGTCGTCGGCGGCCGCCGCCGGGGTGATCGAGATGCTGTTCCCGGCCGACGAGGTTGCCACG
AGCTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGGAGAGAGGATGAGCACTAGCAGCGGCGGCTTTGCCGGCCTGGTGGCGTGCGTCGCCACCGTGTGCCTGCTGCTGCCGACGGGGAGCCGCGCCCAGCTCAAGGTGGGGTTCTAC
AACACCACCTGCCCCAACGCCGAGGCGCTCGTGCGTCAGGTCGTCACGGCTGCTTTCGCCAACAACTCCGGCGTCGCACCCGGCCTCATCCGCCTCCATTTCCATGACTGCTTTGTCAGG
GGCTGCGACGCCTCCGTCCTCCTATCCGTGAACCCCGCCGGCGGCAACACGGAGCGTCAGTCCCGGGCGAACAACCCGAGCCTGCGCGGCTTCGACGTGATCGACGCCGCCAAGGCCGCC
GTGGAGCGGAGCTGCCCGCGCACCGTCTCGTGCGCCGACATCGTCGCCTTCGCCGCCCGCGACAGCGTCAACCTGACGGGCAAGCTCTTCTACCAGGTGCCCGCGGGGCGGCGGGACGGC
CGCGTGTCCAACGAGACGGAGGCCGACACCAACCTGCTTGGCCCTGACAGCACGGCGCAGGTCCTCATCGACGGCTTCAGGAGGAAGAACCTCACCGTCGAGGACATGGTGGTGCTGTCG
GGCTCCCACACTATCGGCCGCTCCCACTGCGCCTCCTTCCTGGCCACCAACCGCCGCCGGCTGGCCGACGGGACCATCAGCGCGGCGTACCAGGCGCTGCTGGAGGCGCTGTGCCCGCCC
AGCCCCGGCCAGTTCGACCCAAACACGACGGAGATCGACGTCAGCACGCCGGCTGTGCTGGACAACAACTACTACAAGCTGCTGCCGCTCAACCTCGGCCTCCACTTCTCCGACGACCAG
CTCATCCGCAACGCCACGCTCGCGCCGCTCGCCAACGCCTTCGCCGCCGACGAGACGCTCTGGAAGCAGAAGTTCGCCGCCGCCATGGTCAAGATGGGCAACATCGACGTCAAGACCGGC
ACCACGGATGAGATCCGCCTCAACTGCAGCGTCGTCAACCCGTCCTCGTCGTCGGCGGCCGCCGCCGGGGTGATCGAGATGCTGTTCCCGGCCGACGAGGTTGCCACGAGCTGA

Retrieve as FASTA