Entry information : GmPrx[P]227 ( Glyma12g16120.1)
Entry ID 9038
Creation 2011-07-04 (Qiang Li)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-12 (Christophe Dunand)
Peroxidase information: GmPrx[P]227 ( Glyma12g16120.1)
Name (synonym) GmPrx[P]227 ( Glyma12g16120.1)
Class Class III peroxidase     [Orthogroup: Prx010]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmPrx[P]227
start..stop
S start..stop
GmPrx249 430 2e-154 1..245 73..319
GmPrx74 428 2e-153 1..245 73..320
GmPrx63 370 2e-130 1..245 74..320
GmPrx330 367 3e-129 1..245 74..320
Literature and cross-references GmPrx[P]227 ( Glyma12g16120.1)
DNA ref. Phytozome 12:   Gm12 (15233505..15232066)
Protein sequence: GmPrx[P]227 ( Glyma12g16120.1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   244
PWM (Da):   %s   25821.88  
PI (pH):   %s   8.79
Sequence
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Send to Peroxiscan
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GCDASVLLDD TSTFT*EKSA CANVNSLRGF EVIDDIKTKV EAACPGVVSF ADILAIVARN SVLGGPSWNV GLGRRDSxQA SKNSATTDIP SPLKDLSVHI SSFSNKGFNT KEMVALSGKY  QRGQARCQLF RGRVYNESSI ESNFATSLKS NCPSxYGDIN LSPLGVTTSV LFDTAYFKNL INKKGLLHSD QQLFSGGSTD SRVTAYSNDP SAFYADFASA MVKMGNLSSL TRKSGQIRSN 
CHKVN 

Retrieve as FASTA  
Remarks Pseudogene from genomic. Incorrect prediction from Phytozome. (Stops in frame, 5' end is missing).
DNA
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GGATGTGATG CATCTGTTCT GTTAGATGAC ACTTCGACCT TTACTTGAGA GAAGTCAGCT TGTGCAAATG TGAATTCTCT GAGAGGTTTT GAAGTAATTG ATGACATCAA AACTAAAGTG  GAGGCTGCTT GTCCCGGAGT TGTTTCTTTT GCAGATATTC TAGCTATTGT TGCCCGTAAT TCCGTTGTTG CAGTAAGCTT AATAAATATG AACAAATAAA ATCCAAAATG ATAAACATAT  TGATATATAG ATATACTTGT TAGCTTGTTA CACTATTATT ATAGAACATG TCTCGTTATA AAATTTGATG AAGTTTCACT GACTCATATT ATAAACCAAA TGAACAATTA TAAATTTTTT  ACAACACTTT TTTTTATCTC TTCATCTCAT TATCGATACA TCTTATCTCA CTTTTCTCTC TTCTCTTGCT ATTTAGAAAG TGTGATGTGA GAATTTTGGT AAGTAAAAAT AGTATTACAT  ACATGATTTT TCTATTTAAC ACTTTCATTT AAACAAGACA TATTTGAGCT TGAAGAATAA ATGATTCTAA CAATCATTTC AGCTATTATT TAGAAAGATG AGGATAACAA GGACAGAACT  TTAGACCACA AGGCCGTTAT AGTAGTTTAA AAATACTACT ATCATAAACT AATTACTCCA AGAGCTTAAA ATAGTAGGTA AAATTACATA AAACAGTGTT ATATCTAACA ATTCACTTTT  AGCAATTGAT TTGTATTTTG GCTTATGTAT CTCAGTTGGG AGGTCCATCC TGGAATGTTG GGTTAGGCAG AAGAGATTCA ACnCAGGCAA GTAAAAATTC TGCCACTACG GATATCCCAT  CCCCACTAAA GGATCTTAGT GTCCATATAT CTTCTTTTTC AAATAAGGGG TTTAACACCA AGGAAATGGT AGCCCTCTCA GGTAAATATT AGAGGATCTC TCACTTTAAC TAATTAATTA  ATGACATTAA TATAAGTAAA ATTATATATT ATGTCAACAA TATATATTAT CACATATATG AATATTGTAT CATCTAATAA TTTTTCATGC ATAAATAGGA GCTCATACAA CGGGGGCAAG  CCAGGTGTCA GCTATTCAGA GGCAGGGTTT ACAACGAAAG CAGCATTGAG TCAAACTTTG CAACATCACT CAAGTCAAAC TGTCCAAGCA CnTATGGAGA CATCAACCTT TCCCCACTTG  GTGTCACCAC AAGTGTTCTA TTTGACACTG CTTATTTCAA GAACCTTATC AACAAAAAGG GACTTCTACA TTCTGATCAG CAGTTATTTA GTGGTGGTTC TACAGATTCT CGGGTCACTG  CCTATAGCAA CGACCCTTCA GCTTTCTATG CAGACTTTGC TAGTGCCATG GTCAAAATGG GAAACCTTAG CTCCTTAACA AGGAAAAGTG GCCAAATTCG TTCTAATTGC CACAAGGTCA 
AT 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGATGTGATG CATCTGTTCT GTTAGATGAC ACTTCGACCT TTACTTGAGA GAAGTCAGCT TGTGCAAATG TGAATTCTCT GAGAGGTTTT GAAGTAATTG ATGACATCAA AACTAAAGTG  GAGGCTGCTT GTCCCGGAGT TGTTTCTTTT GCAGATATTC TAGCTATTGT TGCCCGTAAT TCCGTTTTGG GAGGTCCATC CTGGAATGTT GGGTTAGGCA GAAGAGATTC AACnCAGGCA  AGTAAAAATT CTGCCACTAC GGATATCCCA TCCCCACTAA AGGATCTTAG TGTCCATATA TCTTCTTTTT CAAATAAGGG GTTTAACACC AAGGAAATGG TAGCCCTCTC AGGTAAATAT  CAACGGGGGC AAGCCAGGTG TCAGCTATTC AGAGGCAGGG TTTACAACGA AAGCAGCATT GAGTCAAACT TTGCAACATC ACTCAAGTCA AACTGTCCAA GCACnTATGG AGACATCAAC  CTTTCCCCAC TTGGTGTCAC CACAAGTGTT CTATTTGACA CTGCTTATTT CAAGAACCTT ATCAACAAAA AGGGACTTCT ACATTCTGAT CAGCAGTTAT TTAGTGGTGG TTCTACAGAT  TCTCGGGTCA CTGCCTATAG CAACGACCCT TCAGCTTTCT ATGCAGACTT TGCTAGTGCC ATGGTCAAAA TGGGAAACCT TAGCTCCTTA ACAAGGAAAA GTGGCCAAAT TCGTTCTAAT 
TGCCACAAGG TCAAT 

Retrieve as FASTA