Entry information : BnPrx54-3_other (podC / BnPrx54-3)
Entry ID 91
Creation 2006-09-04 (Christophe Dunand)
Last sequence changes 2012-04-25 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2012-04-25 (Christophe Dunand)
Peroxidase information: BnPrx54-3_other (podC / BnPrx54-3)
Name (synonym) BnPrx54-3_other (podC / BnPrx54-3)
Class Class III peroxidase     [Orthogroup: Prx006]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica napus (oilseed rape)    [TaxId: 3708 ]
Cellular localisation N/D
Tissue types Roots
Seeds
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BnPrx54-3_other
start..stop
S start..stop
BnPrx54-1_other 635 0 1..324 1..324
BrPrx54-1Aa_other 627 0 1..324 1..324
AruPrx54 570 0 1..324 1..324
TsPrx54 568 0 1..324 1..325
Literature and cross-references BnPrx54-3_other (podC / BnPrx54-3)
Literature REFERENCE 1 Regalado,C et al., Cloning a cDNA encoding a turnip peroxidase and structural analysis of deduced protein. Unpublished.

REFREENCE 2 Park,Y.S., Kwak,J.M., Kwon,O.Y., Kim,Y.S., Lee,D.S., Cho,M.J., Lee,H.H. and Nam,H.G. Generation of expressed sequence tags of random root cDNA clones of Brassica napus by single-run partial sequencing.
Plant Physiol. 103, 359-370 (1993)
Protein ref. UniProtKB:   Q6JKN8
mRNA ref. GenBank:   AY423440 [5' end]
Protein sequence: BnPrx54-3_other (podC / BnPrx54-3)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   325 (294)
PWM (Da):   %s   33720.7 (30678.2) Transmb domain:   %s   i7-29o
PI (pH):   %s   4.42 (4.42) Peptide Signal:   %s   cut: 32 range:32-325
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAVTNSSATC NGLFIISLLG IVSSLFGTSS AQLNATFYSG TCPNVSAIVR STIQQALQSD PRIGASLIRL HFHDCFVNGC DGSLLLDDSA NIQSEKNAVP NANSTRGFNV VDDIKTALEN  ACPGIVSCSD ILALASEASV SLAGGPTWAV LLGRRDGLTA NLSGANTGLP SPFEGITNIT AKFTAVGLNT TDVVVLSGAH TFGRAACATF NNRLFNFNGT GSPDPTLNST LLSSLQQLCP 
QNGSASVVTN LDLSTPDAFD NNYFTNLQSN NGLLQSDQEL LSDTGSPTIP IVTSFASNQT QFFEAFALSM IKMGNISPLT KHDGS 

Retrieve as FASTA  
Remarks Partial sequence from 1 cDNA. Short 3'end is missing. PodA and PodC. Cultivar="purple top white globe".
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CAGTTAAACC CAACGTTTTA CTCCGGCACT TGCCCTAACG TCTCTGCCAT CGTTCGCAGC ACTATTGAAC AAGCTCCTCA GTCCGACCCG AGAATCGGAG CCAGCCTTAT CCGTCTTCAT  TTCCACGACT GCTTTGTTAA GGGTTGCGAC GGCTCGCTCT TGCTAGACGA CAGCGCAAAC ATCCAGAGCG AGAAGAACGC TGTACCCAAC GCAAACTCAA CAAGAGGATT CAATGTTGTG  GATGATATCA AAACTGCCCT CGAGAATGCT TGTCCCGGCA TCGTCTCTTG CTCTGACATT CTAGCTCTTG CCTCTGAGGC CTCCGTGTCT TTGGCAGGAG GGCCAACATG GGCTGTGTTA  CTAGGACGAA GAGATGGTCT CACCGCGAAC CTGTCTGGGG CGAACACGGG CCTTCCATCT CCTTTTGAAG GCATCACCAA CATCACAGCT AAATTTACAG CTGTCGGGCT GAATACAACC  GATGTAGTAG TCTTATCTGG AGCGCATACG TTTGGACGTG CAGCTTGCGC AACCTTTAAC AATAGACTAT TCAACTTCAA TGGGACAGGA AGTCCAGACC CGACTCTAAA CTCAACACTT  CTCAGCAGTC TTCAACAGCT ATGTCCTCAA AACGGCAGCG CATCAGTAGT CACCAATCTT GATCTGAGCA CACCTGATGC TTTCGATAAC AATTACTTCA CCAACCTTCA GAGCAACAAT  GGTCTTCTTC AGTCAGACCA AGAACTGTTA TCTGACACCG GTTCTCCCAC CATCCCTATT GTTACTTCCT TTGCAAGTAA CCAAACTCAG TTTTTCGAGG CGTTTGCTCT GTCCATGATC 
AAAATGGGGA ACATTAGTCC GTTGACTGGG AGTAGTGGAG AGATTAGACA AGACTGTAAG GTGGTTAATG GACAATCCTA GA 

Retrieve as FASTA