Entry information : RcPrx41 (29822.m003401)
Entry ID 9367
Creation 2011-06-30 (Qiang Li)
Last sequence changes 2011-10-03 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-08-17 (Christophe Dunand)
Peroxidase information: RcPrx41 (29822.m003401)
Name (synonym) RcPrx41 (29822.m003401)
Class Class III peroxidase    [Orthogroup: Prx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus
Organism Ricinus communis    [TaxId: 3988 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcPrx41
start..stop
S start..stop
MePrx33 593 0 5..320 4..319
PtPrx18 549 0 4..320 2..318
CclPrx36 541 0 1..320 1..327
GhPrx27 528 0 4..320 10..326
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 401687..402646 960  
join(401687..402646)


exon

Literature and cross-references RcPrx41 (29822.m003401)
Protein ref. UniProtKB:   B9RUF4
DNA ref. Phytozome 12:   29822 (401687..402646)
Protein sequence: RcPrx41 (29822.m003401)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   320 (296)
PWM (Da):   %s   35790.89 (33082.4)  
PI (pH):   %s   8.53 (8.54) Peptide Signal:   %s   cut: 25 range:25-320
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTKPPPSLFL IFLSLSLLFI FSESRLSYNY YDKSCPRFTQ IMQETVTNKQ ITSPTTAAAS LRVFFHDCLL NGCDASILIS STPFNMAERD ADINLSLPGD AFDLVTRAKT ALELSCPNTV  SCADILAVAT RDLVTMMGGP YYNVLLGRKD YRISKSSYVE GNLPRPTTPM SSIIKIFTSK GFTIQEMVAL SGAHTIGFSH CKEFSSSVYN DTHYNPRFAQ GLQKACADYP KNPTLSVFND 
IMTPNKFDNM YFQNLPKGLG LLESDHGLYN DPRTRPFVEM YAKDQNKFFH DFAKAMEKLS VHGIKTGRRG EIRRRCDAIN 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Incorrect prediction from Phytozome (Long extra sequence at 3' end has been removed).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACAAAGC CACCACCCTC GTTATTCCTC ATTTTCCTTT CTCTCTCTCT TCTTTTTATC TTCTCTGAAT CAAGACTCTC TTACAACTAC TACGACAAAT CATGTCCAAG ATTCACTCAA  ATCATGCAAG AAACCGTTAC CAACAAACAA ATCACTAGCC CCACAACCGC CGCCGCCTCT CTCCGTGTCT TCTTCCACGA CTGTCTCCTC AACGGCTGCG ACGCCTCCAT TCTCATCTCC  TCCACTCCTT TCAACATGGC CGAGCGCGAT GCAGACATCA ACCTCTCACT CCCAGGTGAC GCATTCGATC TAGTCACTCG TGCCAAGACT GCTCTCGAGC TCTCTTGCCC CAACACAGTT  TCTTGCGCTG ATATCCTTGC TGTTGCCACC CGCGACCTTG TCACTATGAT GGGTGGTCCT TACTATAACG TTCTTCTTGG AAGGAAGGAT TATCGCATCT CCAAATCTTC TTATGTAGAA  GGGAATCTGC CAAGACCCAC TACGCCGATG TCTAGCATTA TCAAGATTTT CACTTCTAAA GGTTTTACTA TTCAGGAAAT GGTGGCTCTA AGTGGGGCGC ACACTATAGG TTTCTCTCAC  TGCAAGGAGT TCAGTAGCAG TGTGTATAAT GACACACATT ATAATCCAAG ATTTGCTCAA GGGTTGCAGA AGGCTTGTGC TGATTATCCA AAGAATCCAA CTCTTTCAGT TTTTAATGAT  ATTATGACTC CAAATAAGTT TGATAACATG TATTTCCAGA ATTTGCCTAA AGGGTTGGGA TTACTAGAGT CAGATCATGG GTTGTATAAT GATCCAAGAA CCAGGCCTTT TGTGGAGATG  TATGCTAAAG ATCAGAATAA GTTTTTCCAT GATTTTGCAA AGGCTATGGA GAAGCTTAGT GTTCATGGAA TCAAGACCGG AAGAAGAGGT GAGATTAGGC GCAGGTGTGA TGCTATCAAC 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACAAAGC CACCACCCTC GTTATTCCTC ATTTTCCTTT CTCTCTCTCT TCTTTTTATC TTCTCTGAAT CAAGACTCTC TTACAACTAC TACGACAAAT CATGTCCAAG ATTCACTCAA  ATCATGCAAG AAACCGTTAC CAACAAACAA ATCACTAGCC CCACAACCGC CGCCGCCTCT CTCCGTGTCT TCTTCCACGA CTGTCTCCTC AACGGCTGCG ACGCCTCCAT TCTCATCTCC  TCCACTCCTT TCAACATGGC CGAGCGCGAT GCAGACATCA ACCTCTCACT CCCAGGTGAC GCATTCGATC TAGTCACTCG TGCCAAGACT GCTCTCGAGC TCTCTTGCCC CAACACAGTT  TCTTGCGCTG ATATCCTTGC TGTTGCCACC CGCGACCTTG TCACTATGAT GGGTGGTCCT TACTATAACG TTCTTCTTGG AAGGAAGGAT TATCGCATCT CCAAATCTTC TTATGTAGAA  GGGAATCTGC CAAGACCCAC TACGCCGATG TCTAGCATTA TCAAGATTTT CACTTCTAAA GGTTTTACTA TTCAGGAAAT GGTGGCTCTA AGTGGGGCGC ACACTATAGG TTTCTCTCAC  TGCAAGGAGT TCAGTAGCAG TGTGTATAAT GACACACATT ATAATCCAAG ATTTGCTCAA GGGTTGCAGA AGGCTTGTGC TGATTATCCA AAGAATCCAA CTCTTTCAGT TTTTAATGAT  ATTATGACTC CAAATAAGTT TGATAACATG TATTTCCAGA ATTTGCCTAA AGGGTTGGGA TTACTAGAGT CAGATCATGG GTTGTATAAT GATCCAAGAA CCAGGCCTTT TGTGGAGATG  TATGCTAAAG ATCAGAATAA GTTTTTCCAT GATTTTGCAA AGGCTATGGA GAAGCTTAGT GTTCATGGAA TCAAGACCGG AAGAAGAGGT GAGATTAGGC GCAGGTGTGA TGCTATCAAC 

Retrieve as FASTA