Entry information : GmAPx[P]15
Entry ID 9671
Creation 2011-11-10 (Qiang Li (Scipio))
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-12-02 (Qiang Li)
Peroxidase information: GmAPx[P]15
Name GmAPx[P]15
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx[P]15
start..stop
S start..stop
GmAPx[P]11 139 3e-45 1..81 20..100
GmAPx[P]13 121 1e-38 13..81 1..69
GmAPx[P]24 98 2e-29 23..81 1..59
GmAPx[P]14 89 2e-25 1..55 20..74
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 29604596..29604837 242  
join(29604596..29604837)


exon

Literature and cross-references GmAPx[P]15
DNA ref. Phytozome 12:   Gm18 (29604596..29604837)
Protein sequence: GmAPx[P]15
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   80
PWM (Da):   %s   8255.2 Transmb domain:   %s   i41-63o
PI (pH):   %s   5.54
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

SAGTFDKGTN TSGPFGHRY* AFGATQGGVP YFELRRFLPG DVFxVFGVCA LNVVFVLTQL AGVVAVEVTG GPEVPFHPER E 

Retrieve as FASTA  
Remarks Pseudogene from genomic. No prediction from phytozome. Just short part sequence with Stop in frame.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TCTGCTGGAA CCTTTGACAA GGGCACAAAC ACTAGTGGAC CCTTCGGACA TCGCTATTAG GCTTTTGGAG CCACTCAAGG TGGAGTTCCC TATTTTGAGC TACGCCGATT TCTACCCGGT  GATGTTTTTT TnGTCTTTGG TGTTTGTGCA CTTAATGTTG TGTTTGTGTT GACGCAGTTG GCTGGCGTTG TTGCCGTTGA GGTCACGGGT GGACCTGAAG TTCCATTCCA CCCTGAAAGA 
GAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TCTGCTGGAA CCTTTGACAA GGGCACAAAC ACTAGTGGAC CCTTCGGACA TCGCTATTAG GCTTTTGGAG CCACTCAAGG TGGAGTTCCC TATTTTGAGC TACGCCGATT TCTACCCGGT  GATGTTTTTT TnGTCTTTGG TGTTTGTGCA CTTAATGTTG TGTTTGTGTT GACGCAGTTG GCTGGCGTTG TTGCCGTTGA GGTCACGGGT GGACCTGAAG TTCCATTCCA CCCTGAAAGA 
GAG 

Retrieve as FASTA