Entry information : GmAPx[P]13
Entry ID 9672
Creation 2011-11-10 (Qiang Li (Scipio))
Last sequence changes 2011-12-14 (Qiang Li (Scipio))
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-12-02 (Qiang Li)
Peroxidase information: GmAPx[P]13
Name GmAPx[P]13
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx[P]13
start..stop
S start..stop
GmAPx[P]15 121 1e-38 1..69 13..81
GmAPx[P]11 115 4e-36 1..69 32..100
GmAPx[P]24 102 4e-31 11..69 1..59
GmAPx[P]23 71 8e-19 29..69 1..41
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 17430662..17430868 207  
complement(join(17430662..17430868))


exon

Literature and cross-references GmAPx[P]13
DNA ref. Phytozome 12:   Gm15 (17430868..17430662)
Protein sequence: GmAPx[P]13
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   68
PWM (Da):   %s   7260.74  
PI (pH):   %s   5.52
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GPIGHRY*AF GATQGGVPYF ELRRFLPGDD FFVFGVCALN DVFVLAQLAS VVAVEVTGGP EVPFHPRRE 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Just short PS with stops in it). No prediction from phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGACCCATCG GACATCGCTA TTAGGCTTTT GGAGCCACTC AAGGCGGAGT TCCCTATTTT GAGCTACGCC GATTTCTACC CGGTGATGAT TTTTTTGTCT TTGGTGTTTG TGCGCTTAAT 
GATGTGTTTG TGTTGGCGCA GTTGGCTAGC GTTGTTGCCG TTGAGGTCAC GGGTGGACCT GAAGTTCCAT TCCACCCTAG AAGAGAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGACCCATCG GACATCGCTA TTAGGCTTTT GGAGCCACTC AAGGCGGAGT TCCCTATTTT GAGCTACGCC GATTTCTACC CGGTGATGAT TTTTTTGTCT TTGGTGTTTG TGCGCTTAAT 
GATGTGTTTG TGTTGGCGCA GTTGGCTAGC GTTGTTGCCG TTGAGGTCAC GGGTGGACCT GAAGTTCCAT TCCACCCTAG AAGAGAG 

Retrieve as FASTA