Entry information : GmAPx[P]16
Entry ID 9673
Creation 2011-10-06 (Qiang Li (Scipio))
Last sequence changes 2011-12-14 (Qiang Li (Scipio))
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-12-02 (Qiang Li)
Peroxidase information: GmAPx[P]16
Name GmAPx[P]16
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx[P]16
start..stop
S start..stop
GmAPx[P]19 192 9e-66 1..100 1..100
GmAPx[P]12 189 1e-64 1..100 1..100
GmAPx[P]21 187 9e-64 1..100 1..100
GmAPx01 160 4e-51 9..99 13..120
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 8398076..8398179 104 N° 2 8398282..8398406 125 N° 3 8398465..8398536 72  
join(8398076..8398179,8398282..8398406,8398465..8398536)


exon

Literature and cross-references GmAPx[P]16
DNA ref. Phytozome 12:   Gm19 (8398076..8398536)
Protein sequence: GmAPx[P]16
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   100
PWM (Da):   %s   10765.66  
PI (pH):   %s   8.49
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
YHLIFPLCQKAVEKAKKLRGFIAEKRCTPLMLCLAWHSAGTFDKGTNTGGPFxDIAIRLLEPLKAEFPILSYADFYPLAGVVAVEVTGGPEVPFHPGREV

Retrieve as FASTA  
Remarks Pseudogene from genomic. No prediction from phytozome. Just 5' PS with stop in it.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TACCATTTGATTTTTCCCCTTTGTCAGAAGGCCGTTGAGAAGGCAAAGAAGCTCAGAGGCTTCATCGCTGAGAAGAGGTGCACTCCTCTAATGCTCTGTTTGGCGTGCACTTTTTTTATT
TTTTTTATTTAACATTAGATCACTGTTATTTACGATTGAGTTTATGGATTATCGTTTTGACGCATTTTGGTGTGTTTCGTGTGCAGATGGCACTCTGCTGGAACCTTTGACAAGGGCACA
AACACTGGTGGACCCTTCGNNGACATCGCTATTAGGCTTTTGGAGCCACTCAAGGCGGAGTTCCCTATTTTGAGCTACGCCGATTTCTACC
CGGTGATGTTTTTTTGTCTTTGGTGTTTG
TGCGCTTAATGTTGTGTTTGTGTTGACGCAGTTGGCTGGCGTTGTTGCCGTTGAGGTCACGGGTGGACCTGAAGTTCCATTCCACCCTGGAAGAGAGGTAT

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TACCATTTGATTTTTCCCCTTTGTCAGAAGGCCGTTGAGAAGGCAAAGAAGCTCAGAGGCTTCATCGCTGAGAAGAGGTGCACTCCTCTAATGCTCTGTTTGGCATGGCACTCTGCTGGA
ACCTTTGACAAGGGCACAAACACTGGTGGACCCTTCGNNGACATCGCTATTAGGCTTTTGGAGCCACTCAAGGCGGAGTTCCCTATTTTGAGCTACGCCGATTTCTACC
AGTTGGCTGGC
GTTGTTGCCGTTGAGGTCACGGGTGGACCTGAAGTTCCATTCCACCCTGGAAGAGAGGTAT

Retrieve as FASTA