Entry information : GmAPx[P]18
Entry ID 9675
Creation 2011-11-10 (Qiang Li (Scipio))
Last sequence changes 2011-12-14 (Qiang Li (Scipio))
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-12-02 (Qiang Li)
Peroxidase information: GmAPx[P]18
Name GmAPx[P]18
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx[P]18
start..stop
S start..stop
GmAPx[P]16 154 5e-51 1..84 1..84
GmAPx[P]19 149 7e-49 1..84 1..84
GmAPx[P]12 144 4e-47 1..76 1..76
GmAPx[P]21 143 1e-46 1..84 1..84
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 39745179..39745282 104 N° 2 39745386..39745567 182  
join(39745179..39745282,39745386..39745567)


exon

Literature and cross-references GmAPx[P]18
DNA ref. Phytozome 12:   Gm06 (39745179..39745567)
Protein sequence: GmAPx[P]18
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   95
PWM (Da):   %s   10633.68 Transmb domain:   %s   o69-91i
PI (pH):   %s   9.28
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
YHLVFPLCQKAVEKAKKLRGFIVEKRCAPLMLCLAWHSARTFDKGTNTGGPFxDIAIRLLEPLKAEFPILSYADFYPVMYFLALVFLRLMLCLGA

Retrieve as FASTA  
Remarks Pseudogene from genomic. Just 5' end with gap in it. No prediction from phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TACCATTTGGTTTTTCCCCTTTGTCAGAAGGCCGTTGAGAAGGCAAAGAAGCTCAGAGGCTTCATCGTTGAGAAGAGATGCGCTCCTCTAATGCTTTGTTTGGCGTGCGTTCTTTTTTAA
TTTTTTTATTTAACATTAGATTGCTGTTATTTACGATTGAGTTTATGGATTATCATTTTGACGCGTTTTGGTGTGTTTCGTGTGCAGATGGCACTCTGCTAGAACCTTTGACAAGGGCAC
AAACACTGGTGGACCCTTCGNNGACATCGCTATTAGGCTTTTGGAGCCACTCAAGGCGGAGTTCCCTATTTTGAGCTACGCCGATTTCTACCCGGTGATGTATTTTTTGGCTTTGGTGTT
TTTGCGCTTAATGTTGTGTTTAGGCGCTT

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TACCATTTGGTTTTTCCCCTTTGTCAGAAGGCCGTTGAGAAGGCAAAGAAGCTCAGAGGCTTCATCGTTGAGAAGAGATGCGCTCCTCTAATGCTTTGTTTGGCATGGCACTCTGCTAGA
ACCTTTGACAAGGGCACAAACACTGGTGGACCCTTCGNNGACATCGCTATTAGGCTTTTGGAGCCACTCAAGGCGGAGTTCCCTATTTTGAGCTACGCCGATTTCTACCCGGTGATGTAT
TTTTTGGCTTTGGTGTTTTTGCGCTTAATGTTGTGTTTAGGCGCTT

Retrieve as FASTA