Entry information : GmAPx[P]20
Entry ID 9677
Creation 2011-11-10 (Qiang Li (Scipio))
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-11-29 (Qiang Li)
Peroxidase information: GmAPx[P]20
Name GmAPx[P]20
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx[P]20
start..stop
S start..stop
GmAPx[P]22 73 3e-20 1..40 7..46
GmAPx[P]16 74 4e-20 1..40 60..99
GmAPx[P]19 71 4e-19 1..40 60..99
GmAPx[P]21 70 1e-18 1..40 60..99
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 17430381..17430434 54 N° 2 17430256..17430321 66  
complement(join(17430256..17430321,17430381..17430434))


exon

Literature and cross-references GmAPx[P]20
DNA ref. Phytozome 12:   Gm15 (17430434..17430256)
Protein sequence: GmAPx[P]20
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   40
PWM (Da):   %s   4340.29  
PI (pH):   %s   4.1
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
LEPLKAEFPILSYADFYPLAGVVDVEVTGGLEVPFHPRRE

Retrieve as FASTA  
Remarks Pesudogene from genomic. Incorrect prediction from phytozome. Short PS.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TTGGAGCCACTCAAGGCGGAGTTCCCTATTTTGAGCTACGCTGATTTCTACCCGGTGATGATTTTTTTGTCTTTGGTGTTTGTGCGCTTAATGCTATGTTTGTGTTGACGCAGTTGGCTG
GCGTTGTTGACGTTGAGGTCACGGGTGGACTTGAAGTTCCATTCCACCCTCGAAGAGAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TTGGAGCCACTCAAGGCGGAGTTCCCTATTTTGAGCTACGCTGATTTCTACCCGTTGGCTGGCGTTGTTGACGTTGAGGTCACGGGTGGACTTGAAGTTCCATTCCACCCTCGAAGAGAG

Retrieve as FASTA