Entry information : TsPrx06 (Thhalv10009658m)
Entry ID 9763
Creation 2011-11-18 (Qiang Li)
Last sequence changes 2011-11-18 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-11-24 (Christophe Dunand)
Peroxidase information: TsPrx06 (Thhalv10009658m)
Name (synonym) TsPrx06 (Thhalv10009658m)
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema
Organism Thellungiella salsuginea (Eutrema salsugineum)    [TaxId: 72664 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TsPrx06
start..stop
S start..stop
AlyPrx06 608 0 1..328 1..326
AhalPrx53 607 0 1..328 1..326
BstrPrx79 605 0 1..328 1..326
AtPrx06 598 0 1..328 1..326
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 6880460..6881446 987  
complement(join(6880460..6881446))


exon

Literature and cross-references TsPrx06 (Thhalv10009658m)
DNA ref. Phytozome 12:   scaffold_5 (6881446..6880460)
Protein sequence: TsPrx06 (Thhalv10009658m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   329 (307)
PWM (Da):   %s   36552.19 (34113.9)  
PI (pH):   %s   7.39 (6.62) Peptide Signal:   %s   cut: 22 range:22-328
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKSCGLRCLF ILLSFPFLLQ ANLSPDYYSK TCPEFDQTLV QIVTEKQIAA PTTAAGTLRL FFHDCMVDGC DASILVASTP RKTSERDADI NRSLPGDAFD LITRIKTAVE LKCPNVVSCS  DILVGATRSL VSMVGGPKIN VKFGRKDSLV SDMNRVERKL ARPNMTMDHI ISIFESSDLT VQEMVALVGA HTIGFSHCKE FASRIFDGEN QSGSPEGMNP KYAAELRKLC ANYTKDEEMS 
AFNDVFTPGK FDNMYYRNLK HGYGLLASDH AIAFDNRTRS LVDLYAANET AFFDAFAKAM VKVSEQKVKT EKHGEVRRRC DQYNDYKG* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron). No EST.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAATCTT GTGGGTTACG TTGTCTGTTT ATTCTCCTGT CGTTTCCATT TCTCCTCCAA GCCAACCTCT CGCCTGATTA TTACAGCAAA ACATGCCCTG AATTCGACCA AACCCTAGTC  CAAATCGTCA CCGAGAAACA AATCGCTGCT CCAACAACAG CCGCCGGAAC ACTCCGTCTC TTTTTCCACG ACTGTATGGT CGACGGCTGC GACGCCTCGA TTCTCGTCGC TTCTACTCCC  CGTAAAACCT CCGAACGCGA CGCCGACATC AACCGATCTC TCCCCGGAGA CGCATTCGAC CTAATCACTC GGATCAAAAC CGCCGTCGAG CTCAAATGCC CCAACGTCGT TTCATGCTCC  GACATCCTCG TCGGAGCTAC GCGCAGCCTC GTCTCCATGG TCGGAGGTCC TAAAATCAAT GTCAAATTCG GTCGTAAAGA CAGTCTCGTC TCCGATATGA ATCGCGTCGA AAGAAAACTA  GCTCGGCCTA ATATGACCAT GGATCACATC ATCTCGATCT TCGAGTCCAG TGACTTGACC GTACAAGAGA TGGTGGCTCT CGTCGGAGCA CACACGATCG GTTTCTCTCA CTGCAAAGAG  TTCGCGAGCC GAATCTTCGA CGGCGAAAAC CAGTCCGGTT CTCCGGAAGG GATGAATCCG AAATACGCGG CGGAGCTGAG GAAGCTTTGC GCGAATTACA CAAAGGACGA AGAGATGTCT  GCGTTTAATG ACGTTTTTAC CCCTGGGAAA TTCGACAACA TGTATTACAG GAACTTGAAG CACGGTTACG GGTTGCTTGC GTCGGATCAC GCGATCGCGT TTGATAACAG GACGCGATCG  TTGGTGGATC TCTACGCGGC GAATGAAACG GCGTTCTTCG ACGCGTTTGC GAAGGCGATG GTGAAGGTTA GCGAGCAGAA GGTGAAGACG GAGAAGCATG GAGAGGTTCG AAGGCGGTGC 
GATCAATACA ATGACTACAA GGGGTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAATCTT GTGGGTTACG TTGTCTGTTT ATTCTCCTGT CGTTTCCATT TCTCCTCCAA GCCAACCTCT CGCCTGATTA TTACAGCAAA ACATGCCCTG AATTCGACCA AACCCTAGTC  CAAATCGTCA CCGAGAAACA AATCGCTGCT CCAACAACAG CCGCCGGAAC ACTCCGTCTC TTTTTCCACG ACTGTATGGT CGACGGCTGC GACGCCTCGA TTCTCGTCGC TTCTACTCCC  CGTAAAACCT CCGAACGCGA CGCCGACATC AACCGATCTC TCCCCGGAGA CGCATTCGAC CTAATCACTC GGATCAAAAC CGCCGTCGAG CTCAAATGCC CCAACGTCGT TTCATGCTCC  GACATCCTCG TCGGAGCTAC GCGCAGCCTC GTCTCCATGG TCGGAGGTCC TAAAATCAAT GTCAAATTCG GTCGTAAAGA CAGTCTCGTC TCCGATATGA ATCGCGTCGA AAGAAAACTA  GCTCGGCCTA ATATGACCAT GGATCACATC ATCTCGATCT TCGAGTCCAG TGACTTGACC GTACAAGAGA TGGTGGCTCT CGTCGGAGCA CACACGATCG GTTTCTCTCA CTGCAAAGAG  TTCGCGAGCC GAATCTTCGA CGGCGAAAAC CAGTCCGGTT CTCCGGAAGG GATGAATCCG AAATACGCGG CGGAGCTGAG GAAGCTTTGC GCGAATTACA CAAAGGACGA AGAGATGTCT  GCGTTTAATG ACGTTTTTAC CCCTGGGAAA TTCGACAACA TGTATTACAG GAACTTGAAG CACGGTTACG GGTTGCTTGC GTCGGATCAC GCGATCGCGT TTGATAACAG GACGCGATCG  TTGGTGGATC TCTACGCGGC GAATGAAACG GCGTTCTTCG ACGCGTTTGC GAAGGCGATG GTGAAGGTTA GCGAGCAGAA GGTGAAGACG GAGAAGCATG GAGAGGTTCG AAGGCGGTGC 
GATCAATACA ATGACTACAA GGGGTAA 

Retrieve as FASTA