Entry information : TsPrx12 (Thhalv10018753m)
Entry ID 9791
Creation 2011-11-18 (Qiang Li)
Last sequence changes 2011-11-21 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-11-12 (Christophe Dunand)
Peroxidase information: TsPrx12 (Thhalv10018753m)
Name (synonym) TsPrx12 (Thhalv10018753m)
Class Class III peroxidase    [Orthogroup: Prx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema
Organism Thellungiella salsuginea (Eutrema salsugineum)    [TaxId: 72664 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TsPrx12
start..stop
S start..stop
ThPrx12 749 0 1..363 23..385
BrPrx12-1Ab_other 683 0 1..363 1..362
AhalPrx49 682 0 1..363 1..358
AlyPrx12 675 0 1..363 1..359
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3943335..3943613 279 N° 2 3942039..3942233 195 N° 3 3941231..3941848 618  
complement(join(3941231..3941848,3942039..3942233,3943335..3943613))


exon

Literature and cross-references TsPrx12 (Thhalv10018753m)
Literature Wong,C.E., Li,Y., Whitty,B.R., Diaz-Camino,C., Akhter,S.R., Brandle ,J.E., Golding,G.B., Weretilnyk,E.A., Moffatt,B.A. and Griffith,M. Expressed sequence tags from the Yukon ecotype of Thellungiella reveal that gene expression in response to cold, drought and salinity shows little overlap. Plant Mol. Biol. 58 (4), 561-574 (2005)

DNA ref. Phytozome 12:   scaffold_9 (3943613..3941231)
EST ref. GenBank:   DN776916.1 [5' end]   DN773597.1 [3' end]
Protein sequence: TsPrx12 (Thhalv10018753m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   364 (332)
PWM (Da):   %s   39789.5 (36344.5) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.39 (8.21) Peptide Signal:   %s   cut: 32 range:32-363
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAKAYSARVLTFLILISLMVVALNLLSTVEAQNKKKPRRGDVPLVKGLSWNFYQKACPKVEKIIRKELKKVFKRDIGLAAAILRIHFHDCFVQGCEASVLLAGSASGPGEQSSIPNLTLRQAAFVVINNLRAIVHKRCGQVVSCSDILALAARDSVVLSGGPDYAVPLGRRDSLAFASQDTTLANLPPPFANASQLITDFESRNLNITDLVALSGGHTIGIAHCPSFTDRLYPNQDPTMNKFFANSLKRTCPTANSSNTQVNDIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKRTRGIVESFAIDEDLFFDHFTVAMIKMGQMSVLTGSQGEIRSNCSARNVDSFMSVLEAGIVEEALSMI*

Retrieve as FASTA  
Remarks Complete sequence fromm genomic and 1 EST.
Promoter
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Send to cis Analysis
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGCTTTCAGC TAGATGGATT GAGTCTCAGG TATCATGTAT AAATTTTTAA CTCCACGCGT GCCTCTAAAT TTCATTCGTA CATGGTCCAG ATCAATTAAA ACCGTGAACT CATCATCCTT  TAGAATGAAT GATGAAAATG ATTTTATTAA AATATAGATC ACTAAACTTT AAATCGAGTT CTACGTACTG CTAATTACAA TTCAATCTAA TAATTAGTAG TAAATTTTTC TAATTCATGT  ACGAGTATCA AAGTCACTAA ATGATCAATG CCACTAATTC ATGTACTAGG CCCACTACTG TCTACGCCCT CCTATGGCCT TAGCAAAAAT TAGGCAGCAA GAGAGGTTGA AACCATGCTT  TGAAATATAT ATTGTATTTT TTTCTTGTTT ATATATATGT ATATATTTTC TTAGTATAAA CTGTATATAC TATAGAAAAC CAACTCTTTT CGCCCAAATT TTTTTTCACA TAAGTTCATA  CACATTCATG GAGACATACC AATTTATATC GAAATTTCTG GGTGTAACGC ATATCCAATT AATAATAGGA AAGAGAGAGC AGAGGAACGT GGCGAACACA TACTAAAAGA GTCTCAAGCA  CATACACATG TCAGGTTCTG ACTTCTAAGA AACATACTTG TTTGATGTAC AATCATATGC TCACTTTGCA TTACATTTTT CAAACTTCAC ACTCTTTAAC TCTTATCCCA CCATTTCTGA  AAAGTCACAA TCTTCATAAA CCACTTACGA TCCACTGACT CAACGAATAC GCCAACTCAA GCGCGCGTGA CTTTCTTGAT TCTACATGGC TTGAGTGTTT CTTCATAAAG CCACATCGAC  GCTTACTTTC TTTCTAATTA AATTGGCTCA AATGTGTGTT TTCTTCGCCT CTCGGACCTA TAAAACTAAG TTATTAAGTG AGCACAACTT GGTTGAAATG TTAAATAGTT CGTGCTATAT  TTTTGTCGCA ATTACAAAAA AAAAATCTTA ATTAAGAAAT TAATGCTAGT AGACTAGTGT ACAGTCTTTT TTCAACTAGA GATTACCGAG TGTATAATCT TTAGAGTTTT TTTTTTCAAA  TTCAGTCTAA AAATACTGAA GCATTACTTG ATGTAACAAT GGTTTTTTAT TGAATGAATT TTATATTAAA TTAAAAAAAT ACTCTTAAAC TAACATGTTT AGTTTCTACA AAATAGCACG  TAGGATTCTT CGAATTTGGG TTCAGTCTCA CAGAAACAAT ACCCTTCTCT AGTTTAAAAA AAAAAAAAAA AACAATACTC TTCTAAACAT TTTCAACTGG TTACATACAC AAAAAGTTAA  ACATTTTCAC GCGACTATTT AGTAGTATAA TGAAAATTTT CTATTTTTGA GATCAGTCTA TACATTTAAA GTTTGTAAAC ATTTTCATTT GTCAATAAGT TCAATTTGAT ATACTAGAAA  GAATCTTGGT TAATAGGTAC TGGATCAATG TCACGAATGT GAATGCCAGT GGAATAAATT AGTTACGGTT CGCACATATT TATCTGCTTT AATCTTTTTT GGAGATAAAT GCCTGCTTTA  ATTTTTTTTG GAGATAAATG CCTGCTTTAA TCTTTTTTGG AGATAAATGC CTGCTTTAAT CTTTGATCCC AAAACTGTAA AAAGTCTATA ATTTTCTTGT CATATGGAAA GAGTTTTTTT  TGGTTAACAA ATAATTGCTA CGTTTATTAA CCAAATCCCG TTCCTACGTA CCAAACGCAA AACTTCCACT TATATTTTTA TTTTTCAAAT AAATAAACGA CTTTCTATTC ATTAAATAAA  AATAAAAATA AGACTGTCAT ATTCTGGTTT TACTAATTAA CATATATATT ATAAAAAAAA ACAGAAAAGG ACCACATTTG CCTATAAAAA CGAAGTCCTT CTATGACTAT ATTCTAAGAA 
CAACAAGAAG CACAGAAAGA GAAAAAGCTT TGTAATTGAA AGACCAACAA GATCAGAAAA A 

Retrieve as FASTA  
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTAAGGCTTATTCAGCACGTGTCCTCACGTTTCTGATATTGATCTCGTTAATGGTGGTGGCACTGAATCTTCTGTCAACGGTAGAAGCACAGAATAAGAAAAAGCCGAGGAGAGGC
GATGTTCCTCTAGTGAAAGGTCTCTCATGGAACTTTTACCAGAAAGCATGTCCCAAAGTCGAAAAAATCATCAGAAAGGAGCTCAAGAAAGTCTTCAAGAGGGATATTGGTTTAGCCGCA
GCCATCCTCCGTATACATTTCCATGACTGCTTCGTTCAG
GTCTATCATCTTTTTTCCTTCTTTTCTCTTTATTCTTTTTCGGGTATCAAAATCTAGAGAGAAACATAAATTATTGATGTT
CTCTAAACCTAATCTAATCACTTCTACGTATGTGATTACATTTTTTATTTAGTTTGTTAATTAAGATAAGAAACCATCATTTAGCAAAAAAAAAAAAAAGATAAGAAACCATATGCAAGT
ATACCCACACAAATATAAAAGGAACCGCGTCGTTTGTCCGAAAAAAAGGAGAAAAATGAATTTTGTAAAATCATAAACAGCCTAGTGGCCCTAGACTATTATTTTACTTTAAAATGTTGT
CACGTGCTGAAATGATCCCGACCGAAATAGCCTAAAGAAAAATCATAACATCGCCTTGAAAGTCTTACGAACATAGAAATAAGGTTGTCAACTTGTCCACTTCTCTCTTCTCTTCTTTTT
AGAAGAAAGCTTTTCTTAGTGTAAAAGTGTAAAAAGTATAAACACTAGTTAAATGACCAAAAGATATTATCGAATTGTATTGTTGAACTAGATTACACCCTTCTTTTCTAATAGTATAGA
TGTACAAACACATGCACTAGGATAGGCTTGAATACAGTAGGGCAGTCGCATTAAATACTATTTACCCGCTTTTTGTGGGTTAGTTGAGTCTCTTTTAATGAAGGTCGTCAATATCTAAAA
TAAATGAATTTCGACCCAAGGGTTCAAAACATAAATAAAACGAATAATAGAGATGTCCCAATATGTTTGCCAAAAAAAAAAAAAAAACGAATAATAGAGATGTCCCAATTATTCTTTTCG
TTTGGGGTTAAAATATAACAGAGGATGGATAGTATACCCTTATTAATCTATTAGTATAAAATATGCATGTACCTATTTAGAATAATTATGTATCCAATTTATTAAACAAAATATTAGATA
CAGTATTCCCCTTCATACTACTGTCAGGTATTTTTTAGTGTTACTTGCAACACCTCTTACTGAATCGTGGCATAATCTGATCAGAAACATAACTATCGAGGAAAATCTTGAATATAGTGT
TTCATTTATTGCTTTCATTTTGAGAATAAACGACAAATAATAATAAAAATAAAAAAATAGGGATGTGAAGCATCAGTGCTGCTAGCTGGATCAGCGAGTGGACCAGGAGAACAATCATCG
ATCCCGAATCTGACACTACGTCAAGCCGCCTTTGTCGTCATCAATAACCTCCGTGCTATCGTCCACAAGCGTTGCGGTCAAGTCGTCTCTTGCTCTGACATCCTCGCTCTAGCCGCTCGT
GACTCCGTCGTCCTT
GTAAACCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAGTCAAAACTCTATTTATGTCTTTTTATACGTTACGCACATTTTCATATTTATTATATCT
TGGAAAAATTACGGCAACTTTAGTTTAAAGTATAAACCAATACGATATATTATAATTGATATATTTTTTTTTTTTACCAATGTAGTCAGGAGGGCCAGACTATGCTGTGCCACTTGGCCG
ACGAGACTCACTAGCGTTCGCAAGCCAGGACACGACGTTAGCTAACTTACCGCCACCATTCGCTAACGCGAGCCAGCTCATCACCGACTTTGAAAGTAGAAACCTCAACATCACCGACTT
AGTTGCGCTTTCCGGTGGTCACACCATCGGAATTGCGCATTGTCCGTCTTTTACGGACCGGCTCTACCCGAACCAAGACCCAACCATGAACAAGTTCTTCGCCAACAGCCTCAAACGCAC
GTGCCCCACAGCGAACTCAAGCAACACGCAAGTGAACGACATAAGGAGCCCTGACGTGTTCGACAACAAGTACTATGTTGATCTCATGAACCGACAAGGGCTTTTCACGTCCGACCAGGA
CCTGTTCGTGGACAAGAGGACACGTGGTATTGTGGAGAGCTTTGCGATCGATGAGGATCTGTTTTTTGATCATTTCACGGTGGCGATGATCAAGATGGGTCAGATGAGTGTCTTGACGGG
GTCACAAGGAGAGATTCGCTCAAACTGCTCAGCAAGAAACGTTGATAGTTTCATGTCTGTTTTGGAAGCAGGAATAGTCGAGGAAGCTCTTTCCATGATCTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTAAGGCTTATTCAGCACGTGTCCTCACGTTTCTGATATTGATCTCGTTAATGGTGGTGGCACTGAATCTTCTGTCAACGGTAGAAGCACAGAATAAGAAAAAGCCGAGGAGAGGC
GATGTTCCTCTAGTGAAAGGTCTCTCATGGAACTTTTACCAGAAAGCATGTCCCAAAGTCGAAAAAATCATCAGAAAGGAGCTCAAGAAAGTCTTCAAGAGGGATATTGGTTTAGCCGCA
GCCATCCTCCGTATACATTTCCATGACTGCTTCGTTCAG
GGATGTGAAGCATCAGTGCTGCTAGCTGGATCAGCGAGTGGACCAGGAGAACAATCATCGATCCCGAATCTGACACTACGT
CAAGCCGCCTTTGTCGTCATCAATAACCTCCGTGCTATCGTCCACAAGCGTTGCGGTCAAGTCGTCTCTTGCTCTGACATCCTCGCTCTAGCCGCTCGTGACTCCGTCGTCCTT
TCAGGA
GGGCCAGACTATGCTGTGCCACTTGGCCGACGAGACTCACTAGCGTTCGCAAGCCAGGACACGACGTTAGCTAACTTACCGCCACCATTCGCTAACGCGAGCCAGCTCATCACCGACTTT
GAAAGTAGAAACCTCAACATCACCGACTTAGTTGCGCTTTCCGGTGGTCACACCATCGGAATTGCGCATTGTCCGTCTTTTACGGACCGGCTCTACCCGAACCAAGACCCAACCATGAAC
AAGTTCTTCGCCAACAGCCTCAAACGCACGTGCCCCACAGCGAACTCAAGCAACACGCAAGTGAACGACATAAGGAGCCCTGACGTGTTCGACAACAAGTACTATGTTGATCTCATGAAC
CGACAAGGGCTTTTCACGTCCGACCAGGACCTGTTCGTGGACAAGAGGACACGTGGTATTGTGGAGAGCTTTGCGATCGATGAGGATCTGTTTTTTGATCATTTCACGGTGGCGATGATC
AAGATGGGTCAGATGAGTGTCTTGACGGGGTCACAAGGAGAGATTCGCTCAAACTGCTCAGCAAGAAACGTTGATAGTTTCATGTCTGTTTTGGAAGCAGGAATAGTCGAGGAAGCTCTT
TCCATGATCTAA

Retrieve as FASTA