Entry information : TsAPx03 (Thhalv10025911m)
Entry ID 9815
Creation 2011-11-18 (Qiang Li)
Last sequence changes 2011-11-21 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-11-12 (Christophe Dunand)
Peroxidase information: TsAPx03 (Thhalv10025911m)
Name (synonym) TsAPx03 (Thhalv10025911m)
Class Ascorbate peroxidase    [Orthogroup: APx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema
Organism Thellungiella salsuginea (Eutrema salsugineum)    [TaxId: 72664 ]
Cellular localisation N/D
Tissue type Leaves
Inducer Salt stress
Repressor N/D
Best BLASTp hits
Perox score E-value TsAPx03
start..stop
S start..stop
BnAPx03-1Aa_other 547 0 1..287 1..287
AtAPx03 533 0 1..287 1..287
CagraAPx03-1 533 0 1..287 1..287
BstrAPx03 532 0 1..287 1..287
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2153311..2153423 113 N° 2 2153594..2153718 125 N° 3 2153977..2154026 50 N° 4 2154444..2154509 66
N° 5 2154600..2154648 49 N° 6 2154771..2154853 83 N° 7 2154943..2155022 80 N° 8 2155170..2155272 103
N° 9 2155572..2155766 195  
join(2153311..2153423,2153594..2153718,2153977..2154026,2154444..2154509,2154600 ..2154648,2154771..2154853,2154943..2155022,2155170..2155272,2155572..2155766)


exon

Literature and cross-references TsAPx03 (Thhalv10025911m)
Literature Wong,C.E., Li,Y., Whitty,B.R., Diaz-Camino,C., Akhter,S.R., Brandle ,J.E., Golding,G.B., Weretilnyk,E.A., Moffatt,B.A. and Griffith,M. Expressed sequence tags from the Yukon ecotype of Thellungiella reveal that gene expression in response to cold, drought and salinity shows little overlap. Plant Mol. Biol. 58 (4), 561-574 (2005).
DNA ref. Phytozome 12:   scaffold_1 (2153311..2155766)
EST ref. GenBank:   DN778946.1 [5' end]
Protein sequence: TsAPx03 (Thhalv10025911m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   288
PWM (Da):   %s   31695.18 Transmb domain:   %s   o258-280i
PI (pH):   %s   6.88
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAPIVDAEYLKQINKARRELRSLIANRNCAPIMLRLAWHDAGTYDAQSKTGGPNGSIRNEEEFNHGANSGLKIALDLCESVKAKHPKITYADLYQLAGVVAVEVTGGPDISFVPGRKDSNVCPREGRLPDAKQGFQHLRDVFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTQEPLKFDNSYFVELLKGESDGLLKLPTDKTLLEDPEFRRYVEIYAKDEDAFFKDYSESHKKLSELGFNSNPSAAKAVADSTVLAQSAFGVAIAAAVVALSYFYEIRKRMK*

Retrieve as FASTA  
Remarks Complete sequence from genomic and 1 EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCACCGATTGTTGACGCGGAGTACTTGAAGCAGATAAACAAGGCTCGCCGTGAACTCCGCTCTCTCATCGCGAACAGGAACTGCGCTCCGATCATGCTTCGATTGGCGTAAGTT
TCTTCCATTTTTCTGGTTTTCATGGCTTCGCTTATGTTGACTGCGACGTGCCTTCGTCTGTGTTCTCTGGAAAAAAAGTCTGGATTATAGTTAGGTTGTGGAAATTGCTGGATCTCGTTT
CGTTTTAGCTGTTGAAATGTTGTCTTCTCTGGTTTTTATGAAGATGGCACGATGCTGGAACCTATGATGCTCAATCGAAGACCGGTGGACCTAATGGCTCGATCAGGAACGAGGAGGAGT
TCAATCATGGTGCTAACAGTGGTTTGAAAATCGCTCTCGATCTCTGTG
GTGTGTTTTTCTCTTCCCTACTTCTTGTGTTGAAGGTTTAGATTTAGTGATTATAGAGTGTACTGTTGATCT
TTCATGGCACAATTTCTCAATTTACTTGCATGATCCAGATATTTTTACTTGTCAGCCAGTGGGATAGATGATTGTGAATTTGGATAGCCAATACTGTGTTCTCTCATATGGTGTATCCTG
TTTGTCTTATGGTTTAAGAAGACTGTTTAAAGTAACCCCGTTGTGCTTTGATGTTTGATGTTTCAGAGAGCGTGAAAGCTAAACATCCCAAAATCACATATGCGGACCTATACCAGGTGA
TTACGATATCTAGTTTAAATATTTTAACATAACAGCAAGGTTCCTACCGGAGTTAGGACTGAATGAATTTCCTAATGGATGCATTTTATTAGTTTTGTCAGCCATATAATTTCCAGATGG
TCTTGTTGTTTTCGACTGCTCCTTTGTCAAGAATACTCTGGAACTCAATCCTGCTGGTGTGTCATTACCAAGAGTTTTGTGTGAAATTTTCTGTTAGATAATTAGACTTGGACTGAATAG
AATTCACATATCTGTCACTCGCACGTATATCACATCTTGTACTGTTTGTATTGTCGTTTGTCCATTATCTGTCTTCTTTCTTATAATATCAATACGTAATATAGGAATCTTTTAAAAGAA
GCGTCCCAGACGGATCATCGGATGTCAATAATTTACTTAATCTTTTGTTTCAGCTTGCTGGTGTGGTAGCAGTGGAGGTTACTGGTGGACCTGATATCAGCTTTGTTCCGGGGAGAAAAG
TATGTTTCTCCTTCTTTGAGCATTATAACAGCTTACCAGTTTAACATTGAAGCACATAACCATAACTAATGTTTCTTTCTTCCTGATAGGATTCAAATGTTTGCCCGAGGGAAGGAAGAC
TTCCTGATGCTAAACAAG
GTACCACAAAATTGTTATATCATTTATAACAAACTTTTCTGCTGAAACTCTAAGCATGGAATTGGAAGACCTTCTCTATGAATTTACTATTCCCTTTTGAGA
ATTTGAAGTTGTGTCTGCAGGTTTCCAACACCTTAGAGATGTCTTCTACCGCATGGGACTATCTGATAAGGATATTGTGGCACTCTCAGGGGGTCATACTCTGGTAAATTCATCGTTCTT
AAATCAACATCCGTTGTTTTTCTCAACAAATAAAAGGTTTGCTCGTGCTTATGGCTACTTTTGGGTGTTTAGGGAAGGGCTCATCCAGAGAGGTCAGGGTTTGATGGGCCATGGACTCAA
GAGCCTCTGAAGTTTGATAACTCCTACTTCGT
GTAATTTTCATTTCTTTATCCTCAGAGCTTTTAAATCTTCTTTGTTTCTAATTTTTTTTCCTGTTTGTGTTTCCAAGAAGAACAAAGC
TCACAGCTACTTTATTACATGATCGGTTAACCAGTGATTAATTACTGTTTTGGTACCAGTGAACTGCTGAAAGGAGAATCAGATGGCTTGTTGAAACTTCCTACTGACAAGACTTTATTG
GAAGACCCAGAGTTCCGTCGTTATGTTGAGATTTATGCTAAG
GTATGATATAACTCGATTGTCTTATTGATTTCACATTTTCATTGAATAACAAATCAAAGCTATCTAGAACCCTACGAA
TACTAATTACCAATGATTGCTAATGTTGCAAGGTAATAAAATGACCACTCTTTACGAATTCTTATAATTCTATCATGGTGAATCGTGATCACAGTCCCTATTTCTGTACATGTTTGCTGT
CAATTAGCTCATAATTTCTGAGAATATGTAGATAGAAAATGGGACGCTTCACTACGATTTCTTTATTTGATTAATGATAAGCTCAATTTGTGTGGAGACAGGATGAGGATGCATTCTTCA
AAGACTACTCTGAATCGCACAAGAAACTCTCTGAGCTCGGTTTCAACTCGAATCCCTCGGCAGCTAAAGCAGTTGCAGACAGTACGGTTCTGGCTCAGAGCGCGTTCGGGGTTGCGATTG
CTGCTGCGGTCGTTGCGTTAAGTTACTTTTACGAGATTCGAAAGAGGATGAAATAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCACCGATTGTTGACGCGGAGTACTTGAAGCAGATAAACAAGGCTCGCCGTGAACTCCGCTCTCTCATCGCGAACAGGAACTGCGCTCCGATCATGCTTCGATTGGCATGGCAC
GATGCTGGAACCTATGATGCTCAATCGAAGACCGGTGGACCTAATGGCTCGATCAGGAACGAGGAGGAGTTCAATCATGGTGCTAACAGTGGTTTGAAAATCGCTCTCGATCTCTGTG
AG
AGCGTGAAAGCTAAACATCCCAAAATCACATATGCGGACCTATACCAG
CTTGCTGGTGTGGTAGCAGTGGAGGTTACTGGTGGACCTGATATCAGCTTTGTTCCGGGGAGAAAAGATTCA
AATGTTTGCCCGAGGGAAGGAAGACTTCCTGATGCTAAACAAG
GTTTCCAACACCTTAGAGATGTCTTCTACCGCATGGGACTATCTGATAAGGATATTGTGGCACTCTCAGGGGGTCAT
ACTCTG
GGAAGGGCTCATCCAGAGAGGTCAGGGTTTGATGGGCCATGGACTCAAGAGCCTCTGAAGTTTGATAACTCCTACTTCGTTGAACTGCTGAAAGGAGAATCAGATGGCTTGTTG
AAACTTCCTACTGACAAGACTTTATTGGAAGACCCAGAGTTCCGTCGTTATGTTGAGATTTATGCTAAG
GATGAGGATGCATTCTTCAAAGACTACTCTGAATCGCACAAGAAACTCTCT
GAGCTCGGTTTCAACTCGAATCCCTCGGCAGCTAAAGCAGTTGCAGACAGTACGGTTCTGGCTCAGAGCGCGTTCGGGGTTGCGATTGCTGCTGCGGTCGTTGCGTTAAGTTACTTTTAC
GAGATTCGAAAGAGGATGAAATAG

Retrieve as FASTA