Entry information : SbPrx87 (Sobic.005G051500.1 [2.1] / SB05G004180 [1.4])
Entry ID 984
Creation 2008-11-19 (Christophe Dunand)
Last sequence changes 2008-11-19 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx87 (Sobic.005G051500.1 [2.1] / SB05G004180 [1.4])
Name (synonym) SbPrx87 (Sobic.005G051500.1 [2.1] / SB05G004180 [1.4])
Class Class III peroxidase    [Orthogroup: Prx013]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Seedlings
Inducer Abscissic acid treatment
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx87
start..stop
S start..stop
ZmPrx22 633 0 1..340 1..338
ZmPrx146 633 0 1..340 1..338
SbPrx112 629 0 35..340 28..333
ZmPrx87 611 0 29..340 29..340
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 5070466..5071488 1023  
complement(join(5070466..5071488))


exon

Literature and cross-references SbPrx87 (Sobic.005G051500.1 [2.1] / SB05G004180 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished.
DNA ref. Phytozome 12:   chromosome_5 (5071488..5070466)
Protein sequence: SbPrx87 (Sobic.005G051500.1 [2.1] / SB05G004180 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   340 (313)
PWM (Da):   %s   36914.54 (34146.0) Transmb domain:   %s   i5-27o
PI (pH):   %s   8.02 (7.50) Peptide Signal:   %s   cut: 28 range:28-340
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MRLTWLAIAF ALAALVVVSS SAARAQASPA ELEVGFYKHS CPKAESIVRN AVRRGIARDA GVGAGLIRMH FHDCFVRGCD ASILINSTPR NKAEKDSVAN NPSMRGFDVV DDAKAVLEAH  CPRTVSCADI IAFAARDGAY LAGGLDYKVP SGRRDGRVSK EDEVLDNNVP APFDDVAELI KSFKRKGLNA DDMVTLSGAH TIGRSHCSSF TQRLYNFSGQ LGRTDPSLDP TYAEHLKMRC 
PWPSSNGQMD PTVVPLDPVT PATFDNQYYK NVLAHKGLFV SDNTLLDNPW TAGMVHFNAA VEKAWQVKFA KAMVKMGKVQ VLTGDEGEIR EKCFVVNPHY 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, no intron) and 1 EST.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGGTTGA CGTGGTTAGC AATTGCCTTT GCCTTGGCGG CGCTCGTCGT CGTCTCCTCA TCGGCGGCAC GCGCACAGGC CTCACCGGCG GAACTGGAGG TCGGTTTCTA CAAGCACTCA  TGCCCAAAGG CCGAGTCCAT CGTGCGCAAC GCCGTCCGCC GCGGTATCGC CCGTGACGCC GGCGTCGGCG CCGGACTCAT CCGGATGCAC TTCCACGACT GCTTCGTCCG GGGCTGCGAC  GCCTCCATCC TCATCAACTC CACGCCGCGC AACAAGGCCG AGAAGGACTC CGTCGCCAAC AACCCCAGCA TGCGCGGCTT CGACGTCGTC GACGACGCCA AGGCCGTCCT CGAGGCGCAC  TGCCCGCGCA CCGTCTCCTG CGCCGACATC ATCGCGTTCG CCGCCCGCGA CGGCGCCTAC CTCGCCGGCG GCCTCGACTA CAAGGTCCCC TCGGGCCGCC GTGACGGCCG CGTGTCCAAA  GAGGACGAGG TGCTCGACAA CAATGTCCCC GCCCCATTTG ACGACGTAGC CGAGCTCATC AAGAGCTTCA AGCGCAAGGG CCTCAACGCC GACGACATGG TCACGCTCTC CGGCGCGCAC  ACCATTGGCC GCTCTCACTG CTCCTCCTTC ACGCAGCGCC TTTACAACTT CAGCGGCCAG CTCGGGCGGA CTGACCCGTC GCTTGACCCC ACCTACGCTG AGCACCTCAA GATGCGCTGC  CCATGGCCGT CCAGCAACGG CCAGATGGAC CCCACGGTGG TGCCGCTCGA CCCGGTCACG CCGGCGACCT TCGACAACCA GTACTACAAG AACGTGCTGG CGCACAAGGG CCTGTTCGTC  TCCGACAACA CGCTGCTCGA CAACCCCTGG ACGGCCGGAA TGGTCCACTT CAACGCCGCA GTCGAGAAGG CATGGCAGGT CAAGTTCGCC AAGGCCATGG TGAAGATGGG CAAGGTCCAG 
GTGCTCACCG GCGACGAGGG AGAGATAAGG GAGAAGTGCT TCGTCGTCAA CCCACACTAC TAG 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGGTTGA CGTGGTTAGC AATTGCCTTT GCCTTGGCGG CGCTCGTCGT CGTCTCCTCA TCGGCGGCAC GCGCACAGGC CTCACCGGCG GAACTGGAGG TCGGTTTCTA CAAGCACTCA  TGCCCAAAGG CCGAGTCCAT CGTGCGCAAC GCCGTCCGCC GCGGTATCGC CCGTGACGCC GGCGTCGGCG CCGGACTCAT CCGGATGCAC TTCCACGACT GCTTCGTCCG GGGCTGCGAC  GCCTCCATCC TCATCAACTC CACGCCGCGC AACAAGGCCG AGAAGGACTC CGTCGCCAAC AACCCCAGCA TGCGCGGCTT CGACGTCGTC GACGACGCCA AGGCCGTCCT CGAGGCGCAC  TGCCCGCGCA CCGTCTCCTG CGCCGACATC ATCGCGTTCG CCGCCCGCGA CGGCGCCTAC CTCGCCGGCG GCCTCGACTA CAAGGTCCCC TCGGGCCGCC GTGACGGCCG CGTGTCCAAA  GAGGACGAGG TGCTCGACAA CAATGTCCCC GCCCCATTTG ACGACGTAGC CGAGCTCATC AAGAGCTTCA AGCGCAAGGG CCTCAACGCC GACGACATGG TCACGCTCTC CGGCGCGCAC  ACCATTGGCC GCTCTCACTG CTCCTCCTTC ACGCAGCGCC TTTACAACTT CAGCGGCCAG CTCGGGCGGA CTGACCCGTC GCTTGACCCC ACCTACGCTG AGCACCTCAA GATGCGCTGC  CCATGGCCGT CCAGCAACGG CCAGATGGAC CCCACGGTGG TGCCGCTCGA CCCGGTCACG CCGGCGACCT TCGACAACCA GTACTACAAG AACGTGCTGG CGCACAAGGG CCTGTTCGTC  TCCGACAACA CGCTGCTCGA CAACCCCTGG ACGGCCGGAA TGGTCCACTT CAACGCCGCA GTCGAGAAGG CATGGCAGGT CAAGTTCGCC AAGGCCATGG TGAAGATGGG CAAGGTCCAG 
GTGCTCACCG GCGACGAGGG AGAGATAAGG GAGAAGTGCT TCGTCGTCAA CCCACACTAC TAG 

Retrieve as FASTA