Entry information : GmAPx[P]24
Entry ID 9858
Creation 2011-11-29 (Qiang Li)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-12 (Christophe Dunand)
Peroxidase information: GmAPx[P]24
Name GmAPx[P]24
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx[P]24
start..stop
S start..stop
GmAPx[P]13 102 3e-31 1..59 11..69
GmAPx[P]15 98 1e-29 1..59 23..81
GmAPx[P]11 97 6e-29 1..59 42..100
GmAPx[P]23 69 3e-18 19..59 1..41
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 17430256..17430432 177  
complement(join(17430256..17430432))


exon

Literature and cross-references GmAPx[P]24
DNA ref. Phytozome 12:   Gm15 (17430432..17430256)
Protein sequence: GmAPx[P]24
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   58
PWM (Da):   %s   6154.13 Transmb domain:   %s   o20-41i
PI (pH):   %s   4.07
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GATQGGVPYF ELR*FLPGDD FFVFGVCALN AMFVLTQLAG VVDVEVTGGL EVPFHPRRE 

Retrieve as FASTA  
Remarks Pseudogene from genomic (5' end and 3' end are missing; stop in frame). No prediction from phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGAGCCACTC AAGGCGGAGT TCCCTATTTT GAGCTACGCT GATTTCTACC CGGTGATGAT TTTTTTGTCT TTGGTGTTTG TGCGCTTAAT GCTATGTTTG TGTTGACGCA GTTGGCTGGC 
GTTGTTGACG TTGAGGTCAC GGGTGGACTT GAAGTTCCAT TCCACCCTCG AAGAGAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGAGCCACTC AAGGCGGAGT TCCCTATTTT GAGCTACGCT GATTTCTACC CGGTGATGAT TTTTTTGTCT TTGGTGTTTG TGCGCTTAAT GCTATGTTTG TGTTGACGCA GTTGGCTGGC 
GTTGTTGACG TTGAGGTCAC GGGTGGACTT GAAGTTCCAT TCCACCCTCG AAGAGAG 

Retrieve as FASTA