Entry information : GmAPx[P]25
Entry ID 9859
Creation 2011-11-29 (Qiang Li)
Last sequence changes 2011-12-02 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-14 (Christophe Dunand)
Peroxidase information: GmAPx[P]25
Name GmAPx[P]25
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx[P]25
start..stop
S start..stop
GmAPx[P]23 77 7e-22 1..42 1..42
GmAPx[P]13 69 1e-18 1..41 29..69
GmAPx[P]11 69 5e-18 1..41 60..100
GmAPx[P]15 67 1e-17 1..41 41..81
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 15641404..15641532 129  
complement(join(15641404..15641532))


exon

Literature and cross-references GmAPx[P]25
DNA ref. Phytozome 12:   Gm20 (15641532..15641404)
Protein sequence: GmAPx[P]25
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   42 (17)
PWM (Da):   %s   4391.27 (1708.9) Transmb domain:   %s   o4-26i
PI (pH):   %s   4.49 (9.70) Peptide Signal:   %s   cut: 26 range:26-42
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

DDFFVFGVCA LNVVFVLTQL ADVVAIEVTG GPKVSFHPGR EV 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Only short PS). No prediction from phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GATGATTTTT TTGTCTTTGG TGTTTGTGCG CTTAATGTTG TGTTTGTGTT GACGCAGTTG GCTGACGTTG TTGCCATTGA GGTCACGGGT GGACCTAAAG TTTCATTCCA TCCTGGAAGA 
GAGGTATAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GATGATTTTT TTGTCTTTGG TGTTTGTGCG CTTAATGTTG TGTTTGTGTT GACGCAGTTG GCTGACGTTG TTGCCATTGA GGTCACGGGT GGACCTAAAG TTTCATTCCA TCCTGGAAGA 
GAGGTATAA 

Retrieve as FASTA