Entry information : SbPrx80 (Sobic.004G242600.1 [2.1] / SB04G028340 [1.4])
Entry ID 986
Creation 2005-12-16 (Christophe Dunand)
Last sequence changes 2005-12-16 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx80 (Sobic.004G242600.1 [2.1] / SB04G028340 [1.4])
Name (synonym) SbPrx80 (Sobic.004G242600.1 [2.1] / SB04G028340 [1.4])
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Pollens
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx80
start..stop
S start..stop
ZmPrx71 680 0 1..366 1..360
ZmPrx57 651 0 10..353 1..345
SiPrx81 596 0 29..347 20..338
BdiPrx113 552 0 39..347 31..339
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 58436288..58437385 1098  
complement(join(58436288..58437385))


exon

Literature and cross-references SbPrx80 (Sobic.004G242600.1 [2.1] / SB04G028340 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_4 (58437385..58436288)
Protein sequence: SbPrx80 (Sobic.004G242600.1 [2.1] / SB04G028340 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   366 (338)
PWM (Da):   %s   39289.64 (36284.9)  
PI (pH):   %s   6.31 (5.65) Peptide Signal:   %s   cut: 29 range:29-366
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MHQHEIPAIM RLSLLLLLVA ALTARAAAQL PAPAGGGALK PDFYSQSCPR AERIIAEVMQ TKQMANPTTA AGVLRVFFHD CFVSGCDASV LIASTQFQKS EHDAEINHSL PGDAFDAVVR  AKLALELECP GVVSCADILA LASGVLVTMT GGPRYPIPLG RRDSLSSSPT APDIELPHSN FTMDRLIQMF GAKGFTVQEL VALSGAHTLG FSHCNEFANR LYNFRNQGGK PEPFDPSMNP  SYARGLQDVC KNYLKDPTIA AFNDIMTPGK FDNMYFVNLE RGLGLLSTDE ELWTDPRTKP LVQLYASNPA AFFTDFGRAM EKLSLYGVKT GADGEVRRRC DAYNSGPAIP GALGGGGAMP 
MPMPKM 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 4, no intron) and 4 ESTs (TC106791) and 5 ESTs (TC105951).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCACCAGC ACGAGATACC AGCCATCATG CGCCTGTCCC TCCTCCTCCT CCTCGTGGCC GCCCTCACGG CGCGCGCCGC GGCACAGCTG CCGGCGCCGG CGGGCGGCGG CGCTCTGAAG  CCAGACTTCT ACAGCCAGTC GTGCCCGCGC GCGGAGCGGA TCATCGCGGA GGTGATGCAG ACGAAGCAGA TGGCGAACCC GACGACGGCC GCGGGCGTGC TCCGCGTCTT CTTCCACGAC  TGCTTCGTCA GCGGGTGCGA CGCGTCGGTG CTGATCGCGT CCACCCAGTT CCAGAAGTCG GAGCACGACG CGGAGATCAA CCACTCCCTC CCCGGCGACG CCTTCGACGC CGTGGTGCGC  GCCAAGCTGG CCCTGGAGCT GGAGTGCCCC GGGGTGGTGT CCTGCGCCGA CATCCTCGCG CTGGCGTCGG GCGTGCTGGT CACCATGACC GGCGGCCCCC GCTACCCGAT CCCGCTGGGC  CGCAGGGACT CGCTGTCGTC GTCGCCCACG GCGCCCGACA TCGAGCTTCC CCACTCCAAC TTCACCATGG ACCGCCTCAT CCAGATGTTC GGCGCCAAGG GCTTCACGGT GCAGGAGCTG  GTGGCGCTGT CGGGCGCCCA CACGCTGGGC TTCTCCCACT GCAACGAGTT CGCCAACCGG CTCTACAACT TCCGCAACCA GGGCGGGAAG CCGGAGCCGT TCGACCCCAG CATGAACCCG  TCCTACGCCA GGGGGCTGCA GGACGTGTGC AAGAACTACC TCAAGGACCC CACCATCGCC GCCTTCAACG ACATCATGAC GCCAGGCAAG TTCGACAACA TGTACTTCGT CAACCTGGAG  CGGGGCCTCG GCCTGCTCAG CACCGACGAG GAGCTGTGGA CGGACCCGCG CACCAAGCCC CTCGTGCAGC TCTACGCCTC CAACCCCGCA GCCTTCTTCA CCGACTTCGG CCGCGCCATG  GAGAAGCTCA GCTTGTACGG CGTCAAGACA GGCGCCGACG GCGAGGTCAG GCGGCGCTGC GACGCCTACA ACAGCGGACC CGCCATCCCC GGCGCCCTCG GCGGCGGCGG CGCCATGCCC 
ATGCCCATGC CCAAGATG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCACCAGC ACGAGATACC AGCCATCATG CGCCTGTCCC TCCTCCTCCT CCTCGTGGCC GCCCTCACGG CGCGCGCCGC GGCACAGCTG CCGGCGCCGG CGGGCGGCGG CGCTCTGAAG  CCAGACTTCT ACAGCCAGTC GTGCCCGCGC GCGGAGCGGA TCATCGCGGA GGTGATGCAG ACGAAGCAGA TGGCGAACCC GACGACGGCC GCGGGCGTGC TCCGCGTCTT CTTCCACGAC  TGCTTCGTCA GCGGGTGCGA CGCGTCGGTG CTGATCGCGT CCACCCAGTT CCAGAAGTCG GAGCACGACG CGGAGATCAA CCACTCCCTC CCCGGCGACG CCTTCGACGC CGTGGTGCGC  GCCAAGCTGG CCCTGGAGCT GGAGTGCCCC GGGGTGGTGT CCTGCGCCGA CATCCTCGCG CTGGCGTCGG GCGTGCTGGT CACCATGACC GGCGGCCCCC GCTACCCGAT CCCGCTGGGC  CGCAGGGACT CGCTGTCGTC GTCGCCCACG GCGCCCGACA TCGAGCTTCC CCACTCCAAC TTCACCATGG ACCGCCTCAT CCAGATGTTC GGCGCCAAGG GCTTCACGGT GCAGGAGCTG  GTGGCGCTGT CGGGCGCCCA CACGCTGGGC TTCTCCCACT GCAACGAGTT CGCCAACCGG CTCTACAACT TCCGCAACCA GGGCGGGAAG CCGGAGCCGT TCGACCCCAG CATGAACCCG  TCCTACGCCA GGGGGCTGCA GGACGTGTGC AAGAACTACC TCAAGGACCC CACCATCGCC GCCTTCAACG ACATCATGAC GCCAGGCAAG TTCGACAACA TGTACTTCGT CAACCTGGAG  CGGGGCCTCG GCCTGCTCAG CACCGACGAG GAGCTGTGGA CGGACCCGCG CACCAAGCCC CTCGTGCAGC TCTACGCCTC CAACCCCGCA GCCTTCTTCA CCGACTTCGG CCGCGCCATG  GAGAAGCTCA GCTTGTACGG CGTCAAGACA GGCGCCGACG GCGAGGTCAG GCGGCGCTGC GACGCCTACA ACAGCGGACC CGCCATCCCC GGCGCCCTCG GCGGCGGCGG CGCCATGCCC 
ATGCCCATGC CCAAGATG 

Retrieve as FASTA