Entry information : GmAPx[P]23
Entry ID 9962
Creation 2011-12-13 (Qiang Li)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-12 (Christophe Dunand)
Peroxidase information: GmAPx[P]23
Name GmAPx[P]23
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx[P]23
start..stop
S start..stop
GmAPx[P]25 77 7e-22 1..42 1..42
GmAPx[P]11 72 2e-19 1..41 60..100
GmAPx[P]13 71 5e-19 1..41 29..69
GmAPx[P]15 71 6e-19 1..41 41..81
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 17429530..17429658 129  
complement(join(17429530..17429658))


exon

Literature and cross-references GmAPx[P]23
DNA ref. Phytozome 12:   Gm15 (17429658..17429530)
Protein sequence: GmAPx[P]23
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   42
PWM (Da):   %s   4373.26 Transmb domain:   %s   o4-26i
PI (pH):   %s   4.37
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

DDFFVFGVCS LNVVFVLTQL AGVIAIEVTG GPQVPFHPGR EV 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Just short PS). No prediction from phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GATGATTTTT TTGTCTTTGG TGTTTGTTCG CTTAATGTTG TGTTTGTGTT GACGCAGTTG GCTGGCGTTA TTGCCATTGA GGTCACGGGC GGACCTCAAG TTCCATTCCA CCCTGGAAGA 
GAGGTATAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GATGATTTTT TTGTCTTTGG TGTTTGTTCG CTTAATGTTG TGTTTGTGTT GACGCAGTTG GCTGGCGTTA TTGCCATTGA GGTCACGGGC GGACCTCAAG TTCCATTCCA CCCTGGAAGA 
GAGGTATAA 

Retrieve as FASTA