The peroxidase database

Citation Reference:

Please use the following article when citing PeroxiBase:
  • Fawal N, Li Q, Savelli B, Brette M, Passaia G, Fabre M, Mathé C and Dunand D.
    PeroxiBase: a database for large-scale evolutionary analysis of peroxidases.
      Nucleic Acids Res. 2013 Jan;41(Database issue):D441-4. PMID:23180785

Previous articles about the PeroxiBase:

  • Koua D, Cerutti L, Falquet L, Sigrist CJ, Theiler G, Hulo N, Dunand C.
    PeroxiBase: a database with new tools for peroxidase family classification.
      Nucleic Acids Res. 2008 Oct 23. PMID:18948296
  • Oliva M, Theiler G, Zamocky M, Koua D, Margis-Pinheiro M, Passardi F, Dunand C.
    PeroxiBase: a powerful tool to collect and analyse peroxidase sequences from Viridiplantae.
      J Exp Bot. 2009;60(2):453-9. PMID:19112168
  • Passardi F, Theiler G, Zamocky M, Cosio C, Rouhier N, Teixera F, Margis-Pinheiro M, Ioannidis V, Penel C, Falquet L, Dunand C.
    PeroxiBase: The peroxidase database.
      Phytochemistry 2007 June;68(12):1605-11. PMID:17544465
  • Bakalovic N, Passardi F, Ioannidis V, Cosio C, Penel C, Falquet L, Dunand C.
    PeroxiBase: a class III plant peroxidase database.
      Phytochemistry 2006 Mar;67(6):534-9. PMID:16442574

Other articles:

  • Francoz E, Ranocha P, Nguyen-Kim H, Jamet E, Burlat V, Dunand C.
    Roles of cell wall peroxidases in plant development.
      Phytochemistry 2015, 112: 15-21 PMID:25109234
  • Li Q, Yu H, Cao PB, Fawal N, Mathé C, Azar S, Cassan-Wang H, Myburg AA, Grima-Pettenati J, Marque C, Teulières C, Dunand C.
    Explosive Tandem and Segmental Duplications of Multigenic Families in Eucalyptus grandis.
      Genome Biol Evol. 2015 Mar 13;7(4):1068-81 PMID:25769696
  • Fawal N, Li Q, Mathé C, Dunand C.
    Automatic multigenic family annotation: risks and solutions.
      Trends Genet. 2014 Aug;30(8):323-5. PMID:25017189
  • Fawal, N., Savelli, B., Dunand, C., Mathé
    GECA : a fast tool for Gene Evolution and Conservation Analysis in eukaryotic protein families.
    Bioinformatics. Application Notes. 2012. PMID:22467908
  • Olson, A., Aerts, A., Asiegbu, F., Belbahri, L., Bouzid, O., Broberg, A., Canback, B., Coutinho, P.M., Cullen, D., Dalman, K., Deflorio, G., van Diepen, L., Dunand, C., Duplessis, S., Durling, M., Gonthier, P., Grimwood, J., Gunnar Fossdal, C., Hansson, D., Henrissat, B., Hietala, A., Himmelstrand, K., Hoffmeister, D., Hogberg, N., James, T., Karlsson, J., Kohler, A., Kues, U., Lee, Y., Lin, Y.-C., Lind, M., Lindquist, E., Lombard, V., Lucas, S., Lunden, K., Morin, E., Murat, C., Park, R., Raffaello, T., Rouze, P., Salamov, A., Schmutz, J., Solheim, H., Stahlberg, J., Velez, M., de Vries, R., Wiebenga, A., Woodward, S., Yakovlev, I., Garbelotto, M., Martin, F., Grigoriev, I., Stenlid, J.
    Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.
    New Phytol. 2012 Mar 28. doi: 10.1111/j.1469-8137.2012.04128.x. PMID:22463738
  • Delaux PM, Nanda AK, Mathé C, Sejalon-Delmas N, Dunand C.
    Molecular and biochemical aspects of plant terrestrialization.
    Perspective in Plant Ecology, Evolution and Systematics. 2012 14 (1), 49-59.
  • Dunand C, Mathé C, Lazzarotto F, Margis R, Margis-Pinheiro M.
    Ascorbate peroxidase-related (APx-R) is not a duplicable gene.
    Plant Signal Behav. 2011 Dec;6(12):1908-13. PMID:22231200
  • Lazzarotto F, Teixeira FK, Barcelos Rosa S, Dunand C, Lemelle Fernandes C, de Vasconcelos Fontenele A, Silveira JAG, Verli H, Margis R, Margis-Pinheiro M.
    APX-R is a new heme-containing protein functionally associated to APx but evolutionarily divergent.
    New Phytol. 2011 Jul ;191(1):234-50. PMID:21352234
  • Mathé C, Barre A, Jourda C, Dunand C (2010)
    Evolution and expression of class III peroxidases.
    Arch Biochem Biophys 500 : 58-65. PMID:20398621
  • Margis R, Dunand C, Teixeira FK, Margis-Pinheiro M.
    Glutathione peroxidase family - an evolutionary overview.
    FEBS J. 2008 Aug;275(15):3959-3970. PMID:18616466
  • Zamocky M, Jakopitsch C, Furtmüller PG, Dunand C, Obinger C.
    The peroxidase-cyclooxygenase superfamily: Reconstructed evolution of critical enzymes of the innate immune system.
    Proteins 2008 Aug;72(2):589-605. PMID:18247411
  • Passardi F, Zamocky M, Favet J, Jakopitsch C, Penel C, Obinger C and Dunand C.
    Phylogenetic distribution of catalase-peroxidases: are there patches of order in chaos?
    Gene 2007 August;397(1-2):101-113. PMID:17561356
  • Passardi F, Bakalovic N, Teixeira FK, Margis-Pinheiro M, Penel C, Dunand C.
    Prokaryotic origins of the non-animal peroxidase superfamily and organelle-mediated transmission to eukaryotes.
    Genomics 2007 May;89(5):567-79. PMID:17355904
  • Zamocky M, Dunand C.
    Divergent evolutionary lines of fungal cytochrome c peroxidases belonging to the superfamily of bacterial, fungal and plant heme peroxidases.
    FEBS Lett. 2006 Dec 11;580(28-29):6655-64. PMID:17126331
  • Passardi F, Longet D, Penel C, Dunand C.
    The class III peroxidase multigenic family in rice and its evolution in land plants.
    Phytochemistry 2004 Jul;65(13):1879-93. PMID:15279994