PeroxiBase - VpCP02

PeroxiBase - VpCP02_RIMD2210633

Entry information

Entry ID

2656

Last sequence changes

2006-08-29 (Christophe Dunand)

Sequence status

complete

Reviewer

Filippo Passardi

Last annotation changes

2007-03-13 (Filippo Passardi)

Peroxidase information

Name

VpCP02_RIMD2210633

Class

Catalase peroxidase

Taxonomy

Bacteria Proteobacteria Gammaproteobacteria Vibrionales

Organism

Vibrio parahaemolyticus [TaxId: 670]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value
ValCP01_12G01	1412	0
VchCP01_MO10	1253	0
VvuCP_CMPCP6	1226	0
VvuCP_YJ016	1222	0
VpCP01_RIMD2210633	1218	0

Literature and cross-references

Literature

REFERENCE 1 Makino,K. et al. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae Lancet 361 (9359), 743-749 (2003) REFERENCE 2 Nasu,H., Iida,T., Sugahara,T., Yamaichi,Y., Park,K.S., Yokoyama,K., Makino,K., Shinagawa,H. and Honda,T. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains J. Clin. Microbiol. 38 (6), 2156-2161 (2000)

DNA sequence

http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=47118311&itemID=768&view=gbwithparts

Protein ref.

GenPept: 28900623 UniProtKB: Q87I38

Protein sequence

Sequence length

724 amino acids

Sequence

MSNTNGGSVG KCPVMHGGQT STDKSVMDWW PNALNLDILH QHDSKTNPFG PDFNYKEELK KLDVDALKQD LKDLMTNSQV WWPADWGHYG GLMIRMAWHA 
AGSYRIADGR GGAATGNQRF APLNSWPDNA NLDKARRLLW PIKRKYGNKL SWADLIILAG NMAYESMGFK TFGFGFGRED IWHPEKDTYW GSEQEWLAPS 
GAKNSRYSGE RDLENPLAAV MMGLIYVNPE GVDGNPDPLK TAQDMRVTFA RMAMNDEETV ALTAGGHTVG KCHGNGDAAN LGPDPEGADV HEQGLGWMNH 
KTRGIGRDTV TSGLEGAWTT HPTQWDNGYF YLLFKYDWEL KKSPAGAWQW EPIDIEEQDK PVDVEDGSKR YNPIMTDADM ALKMDPEYRK ISERFQQDPA 
YFEDMFARAW FKLTHRDMGP KSCYLGPDVP SEDLIWQDPT PAGKTDYNVD LVKGKIEASG LSIADLVATA WDSARTYRGS DRRGGANGAR IRLAPQKDWQ 
GNEPERLSRV LAVLESIAAE EGCSVADAIV LAGNVGIELA ARAAGHDVSV PFAPGRGDAS QDMTDVESFE VLEPVADGFR NWLKKDYVVK PEELLLDRAQ 
LMGLTAPEMT VLIGGLRVLG SNYGGSKDGV FTDRVGTLSN DFFVNLTDMA YTWKPAGENQ YEIRDRKTDQ VKWTATRVDL VFGSNSILRS YAEVYAQDDN 
QEKFIHDFVA AWTKVMNADR FDLQ 

Retrieve as FASTA

Remarks

from chromosome II, complete sequence (1.8 M). Serotype="O3:K6".

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The Bioinformatics platform of Toulouse-Midi-Pyrénnées