GECA

Gene Evolution/Conservation Analysis
aligns exon/intron structures and detects common introns and similarities between sequences in order to provide information about genes evolution and/or conservation.
GECA from Blast compares the input sequences to data from the PeroxiBase database.
To use it on your own data, please go the "GECA Demo" in the tool bar.


Documentation

Go to Documentation.

INPUT

GECA from Blast needs 3 types of inputs:
  • a Gene structure file.
  • a genomic sequence in FASTA format.
  • a protein sequence in FASTA format.

From search

GECA from Search extracts the sequences that matches the search criteria from the PeroxiBase and compares them in order to generate a graphical output.

Go to GECA from Search.

To use it on your own data, please go the "GECA Demo" link below.
GECA Demo. Limited features for test only.

GECA from Blast

[example: complement(join(exon_1_start..exon_1_stop,exon_2_start..exon_2_stop))]
Sequences longer than 5'000 aa/nt will be truncated!
Parameters


For more Information, please visite the Documentation.
For Questions, please write to : Peroxibase@lrsv.ups-tlse.fr