Cis Elements Analysis

PLACE
Search for Plant Cis-acting Regulatory DNA Elements

MEME
MEME will analyze your sequences for similarities among them and produce a description (motif) for each pattern it discovers.


Please enter the nucleotide sequence as FASTA formats (Max 20 sequences) and press submit button.

NOTE: Length of submitting sequence must be less than 4,356. Otherwise, you will get empty result.

If you use this data file in published research, please cite:
Higo, K., Y. Ugawa, M. Iwamoto and T. Korenaga (1999) Plant cis-acting
regulatory DNA elements (PLACE) database. Nucleic Acids Res. 27 (1): 297-300.

MEME logo
Use this form to submit DNA or protein sequences to MEME. MEME will analyze your sequences for similarities among them and produce a description (motif) for each pattern it discovers.
Data Submission Form 1563708019
How do you think the occurrences of a single motif are distributed among the sequences?

MEME will find the optimum width of each motif within the limits you specify here:
Minimum width (>= 2)
Maximum width (<= 300)
Maximum number of motifs to find
Please enter the sequences which you believe share one or more motifs.
The sequences may contain no more than 60000 characters total total in any of a large number of formats.

Enter the name of a file containing the sequences here:
or the actual sequences here (Sample Protein Input Sequences):
You need at least two differents nucleotide sequences (name and sequence)!
Options
MEME will find the optimum number of sites for each motif within the limits you specify here:
Minimum sites (>= 2)
Maximum sites (<= 600)
Perform discriminative motif discovery – Enter the name of a file containing negative sequences :
Select background Markov model Order:
Or enter the name of a file containing a background Markov model:
DNA-ONLY OPTIONS (Ignored for protein searches)
don't forget to provide an email address !
pid 1563708019 Path ./assets/users/temp/1563708019/Meme/ Type promoter
You need at least two differents nucleotide sequences (name and sequence)!
PATTERN GET
formatedseq from SQL name: AtPrxII01