The peroxidase database

Phylogenetic Study

This Pipeline runs PhyML and GECA in order to generate a phylogenetic tree with gene structure information that will be visualized by Archaeopteryx .

Launch Pipeline

Start by selecting the sequences of interest from a Multicriteria search.

The selected sequences will be aligned with MAFFT in order to generate the phylogenetic tree with PhyML. In parallel, the detection of introns will be done thanks to CIWOG followed by GECA that will generate the gene structures.

Finally, these results will be combined together and visualized with Archaeopteryx.

Limitations

This pipeline is limitted to a 100 sequences.