| Taxonomic Group | # Organisms | # Sequences |
|---|---|---|
| Bacteria | 475 | 1422 |
| Actinobacteria | 53 | 213 |
| Bacteroidetes/Chlorobi | 44 | 105 |
| Chlamydiae/Verrucomicrobia | 4 | 4 |
| Cyanobacteria | 21 | 110 |
| Firmicutes | 65 | 172 |
| Proteobacteria | 262 | 765 |
| Alphaproteobacteria | 69 | 170 |
| Betaproteobacteria | 53 | 198 |
| Deltaproteobacteria | 14 | 31 |
| Epsilonproteobacteria | 10 | 12 |
| Gammaproteobacteria | 114 | 352 |
| Other Proteobacteria | 2 | 2 |
| Other Bacteria | 26 | 53 |
| Archaea | 31 | 55 |
| Crenarchaeota | 6 | 8 |
| Euryarchaeota | 25 | 47 |
| Other Archea | 0 | 0 |
| Fungi/Metazoa | 548 | 3319 |
| Choanoflagellida | 3 | 9 |
| Fungi | 386 | 2553 |
| Ascomycota | 217 | 1296 |
| Basidiomycota | 147 | 1142 |
| Chytridiomycota | 3 | 35 |
| Microsporidia | 3 | 4 |
| Zygomycota | 2 | 21 |
| Other Fungi | 14 | 55 |
| Metazoa | 156 | 754 |
| Bilateria | 143 | 722 |
| Deuterostomia | 77 | 552 |
| Ecdysozoa | 61 | 164 |
| Lophotrocozoa | 5 | 6 |
| Other Bilateria | 0 | 0 |
| Cnidaria | 8 | 22 |
| Ctenophora | 1 | 1 |
| Placozoa | 1 | 6 |
| Porifera (sponges) | 3 | 3 |
| Other Metazoa | 0 | 0 |
| Other Fungi/Metazoa | 3 | 3 |
| Stramenopiles | 69 | 251 |
| Bacillariophyta (diatoms) | 7 | 37 |
| Phaeophyceae (brown algae) | 40 | 92 |
| Chrysophyceae (golden algae) | 1 | 5 |
| Other Stramenopiles | 21 | 117 |
| Alveolata | 29 | 50 |
| Apicomplexa | 11 | 18 |
| Ciliophora (ciliates) | 5 | 7 |
| Dinophyceae (dinoflagellates) | 8 | 21 |
| Other Alveolata | 5 | 4 |
| Excavata | 17 | 65 |
| Euglenida | 2 | 9 |
| Kinetoplastida | 11 | 36 |
| Diplomonadida | 3 | 8 |
| Parabasalidea | 1 | 12 |
| Other Excavata | 0 | 0 |
| Rhizaria | 4 | 14 |
| Cercozoa | 2 | 9 |
| Foraminifera | 1 | 2 |
| Radiolaria | 0 | 0 |
| Other Rhizaria | 1 | 3 |
| Amoebozoa | 7 | 28 |
| Acanthamoebidae | 1 | 1 |
| Entamoeba | 1 | 1 |
| Mycetozoa | 3 | 22 |
| Pelobiontida | 1 | 3 |
| Lobosea | 1 | 1 |
| Other Amobozoa | 0 | 0 |
| Viridiplantae (green plants) | 1406 | 12639 |
| Chlorophyta (green algae) | 126 | 111 |
| Streptophyta | 1280 | 12528 |
| Streptophyta algae | 58 | 390 |
| Bryophytes | 105 | 713 |
| Lycophytes | 22 | 252 |
| Fern | 67 | 72 |
| Gymnospermae | 93 | 709 |
| Angiospermae | 935 | 10392 |
| Basal Magnoliophyta | 12 | 301 |
| Ceratophyllales | 1 | 3 |
| Eudicotyledons | 739 | 7606 |
| Magnoliids | 4 | 29 |
| Monocotyledons | 153 | 2449 |
| Other Angiospermae | 26 | 4 |
| Other Viridiplantae | 0 | 0 |
| Rhodophyta (red algae) | 41 | 70 |
| Bangiophyceae | 9 | 36 |
| Corallina | 2 | 3 |
| Florideophyceae | 27 | 31 |
| Other Rhodophyta | 0 | 0 |
| Glaucocystophyceae | 4 | 11 |
| Cyanophoraceae | 1 | 5 |
| Glaucocystales | 1 | 5 |
| Other Glaucophyceae | 2 | 1 |
| Haptophyceae (prymnesiophytes) | 6 | 37 |
| Isochrysidales | 3 | 12 |
| Pavlovales | 1 | 4 |
| Prymnesiales | 2 | 21 |
| Other Haptophyceae | 0 | 0 |
| Cryptophyta (cryptomonads) | 6 | 27 |
| Cryptomonadales | 2 | 8 |
| Pyrenomonadales | 4 | 19 |
| Other Cryptophyta | 0 | 0 |
| Other | 5 | 37 |
| Heterolobosea | 1 | 20 |
| Oxymonadida | 1 | 1 |
| Jakobida | 1 | 15 |
| Malawimonadidae | 0 | 0 |