RedOxiBase: View Perox 10070

Entry information : CcasGPx01

Entry ID	10070
Creation	2012-01-04 (Passaia GisÃ¨le)
Last sequence changes	2012-01-04 (Passaia GisÃ¨le)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2012-04-23 (Catherine Mathe (Scipio))

Peroxidase information: CcasGPx01

Name

CcasGPx01

Class

Fungi-Bacteria glutathione peroxidase [Orthogroup: Gpx3001]

Taxonomy

Eukaryota Fungi Ascomycota Saccharomycetes Candida

Organism

Candida caseinolytica [TaxId: 51930 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CcasGPx01 start..stop	S start..stop
ArubGPx03	261	1.75e-91	1..160	1..160
VpolGPx01	252	8.98e-88	1..159	1..159
SmiGPx02	248	3.7e-86	1..159	1..159
KaesGPx01	248	5.85e-86	1..159	1..159

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1743295..1743771	477
complement(join(1743295..1743771))

Literature and cross-references CcasGPx01

DNA ref.	JGI genome: scaffold_1 (1743771..1743295)

Protein sequence: CcasGPx01

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	159
PWM (Da):	17969.3
PI (pH):	8.43

Sequence 0
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSSFYDLKPL DKTGQPYDFA QLKGKVVLIV NVASKCGFTP QYKGLEELYQ KYRDRGLVII GFPCNQFAKQ EPGTDEEIAS FCSLNYGVDF PIMKKIDVNG DNTDPVYKFL KSKKSGLLGF
KGIKWNFEKF LVDKNGEVVG RFSSVKTPES LEPEIEKLL*

Retrieve as FASTA

Remarks

Complete sequence from genomic (scaffold_1:1743008-1743877 (-), no intron) NO EST. Strain \\\\\\\"Y-17796\\\\\\\".

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCATCAT TTTACGACCT GAAACCTCTC GACAAGACTG GTCAACCTTA TGACTTCGCA CAATTGAAGG GCAAAGTTGT TCTCATTGTG AATGTCGCTT CGAAGTGCGG TTTCACTCCC CAGTACAAGG GCTTAGAGGA GCTTTATCAG AAGTATCGGG ATCGCGGACT CGTGATTATT GGGTTCCCAT GCAATCAATT CGCTAAACAG GAACCTGGCA CAGACGAAGA GATTGCGTCT TTCTGTTCTC TCAACTATGG CGTCGACTTC CCGATCATGA AGAAGATCGA CGTCAATGGC GACAACACCG ACCCTGTTTA CAAGTTCCTG AAATCGAAGA AGTCTGGGCT GCTTGGCTTC
AAGGGTATCA AATGGAACTT TGAGAAGTTC TTGGTCGACA AGAATGGCGA GGTTGTTGGA CGTTTCAGTA GCGTCAAGAC ACCTGAGTCT CTTGAACCTG AGATCGAGAA GTTGTTG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA