Entry information : VvPrx[P]69
Entry ID 10079
Creation 2012-01-05 (Qiang LI)
Last sequence changes 2012-01-05 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-01-05 (Qiang Li)
Peroxidase information: VvPrx[P]69
Name VvPrx[P]69
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Vitaceae Vitis
Organism Vitis vinifera (Grape)    [TaxId: 29760 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VvPrx[P]69
start..stop
S start..stop
VvPrx[P]71 88 2e-26 1..42 2..43
VvPrx[P]74 87 1e-25 1..42 15..56
VvPrx[P]73 88 1e-25 1..42 18..59
VvPrx[P]72 87 1e-25 1..42 2..43
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4243248..4243373 126  
complement(join(4243248..4243373))


exon

Literature and cross-references VvPrx[P]69
DNA ref. Phytozome 12:   chr16 (4243373..4243248)
Protein sequence: VvPrx[P]69
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   42
PWM (Da):   %s   4485.13  
PI (pH):   %s   4.19
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

TATLRLFFHD CMVEGYDASV LISSNSFNTA QHDADISLSL PG 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Short PS). No prediction from phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ACTGCCACTC TCCGCCTCTT CTTCCATGAC TGCATGGTCG AAGGCTACGA TGCCTCAGTC CTCATCTCCT CCAACTCCTT CAACACCGCC CAGCACGACG CCGACATCAG CCTCTCCCTC 
CCAGGC 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ACTGCCACTC TCCGCCTCTT CTTCCATGAC TGCATGGTCG AAGGCTACGA TGCCTCAGTC CTCATCTCCT CCAACTCCTT CAACACCGCC CAGCACGACG CCGACATCAG CCTCTCCCTC 
CCAGGC 

Retrieve as FASTA