Entry information : VvPrx[P]69
Entry ID 10079
Creation 2012-01-05 (Qiang LI)
Last sequence changes 2012-01-05 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-01-05 (Qiang Li)
Peroxidase information: VvPrx[P]69
Name VvPrx[P]69
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Vitaceae Vitis
Organism Vitis vinifera (Grape)    [TaxId: 29760 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VvPrx[P]69
start..stop
S start..stop
VvPrx[P]71 88 2.72e-26 1..42 2..43
VvPrx[P]74 87 1.13e-25 1..42 15..56
VvPrx[P]73 88 1.17e-25 1..42 18..59
VvPrx[P]72 87 1.27e-25 1..42 2..43
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '10079' 'complement(join(4243248..4243373))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4243248..4243373 124  
complement(join(4243248..4243373))


exon

Literature and cross-references VvPrx[P]69
DNA ref. Phytozome 12:   chr16 (4243373..4243248)
Protein sequence: VvPrx[P]69
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   42
PWM (Da):   %s   4485.13  
PI (pH):   %s   4.19
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

TATLRLFFHD CMVEGYDASV LISSNSFNTA QHDADISLSL PG 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Short PS). No prediction from phytozome.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ACTGCCACTC TCCGCCTCTT CTTCCATGAC TGCATGGTCG AAGGCTACGA TGCCTCAGTC CTCATCTCCT CCAACTCCTT CAACACCGCC CAGCACGACG CCGACATCAG CCTCTCCCTC 
CCAGGC 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ACTGCCACTC TCCGCCTCTT CTTCCATGAC TGCATGGTCG AAGGCTACGA TGCCTCAGTC CTCATCTCCT CCAACTCCTT CAACACCGCC CAGCACGACG CCGACATCAG CCTCTCCCTC 
CCAGGC 

Retrieve as FASTA