Entry information : VvPrx[P]71
Entry ID 10081
Creation 2012-01-05 (Qiang LI)
Last sequence changes 2012-01-05 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-17 (Christophe Dunand)
Peroxidase information: VvPrx[P]71
Name VvPrx[P]71
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Vitaceae Vitis
Organism Vitis vinifera (Grape)    [TaxId: 29760 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VvPrx[P]71
start..stop
S start..stop
VvPrx[P]74 89 2.51e-26 1..43 14..56
VvPrx[P]73 89 2.52e-26 1..43 17..59
VvPrx[P]72 88 2.61e-26 1..43 1..43
VvPrx[P]69 88 2.79e-26 2..43 1..42
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '10081' 'complement(join(11152996..11153124))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11152996..11153124 127  
complement(join(11152996..11153124))


exon

Literature and cross-references VvPrx[P]71
DNA ref. Phytozome 12:   chr9 (11153124..11152996)
Protein sequence: VvPrx[P]71
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   43 (191)
PWM (Da):   %s   4556.17 (19355.5)  
PI (pH):   %s   4.19 (5.34) Peptide Signal:   %s   cut: 27 range:27-217
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATATLRLFFH DCMVEGYDAS VLISSNSFNT AQHDADISLS LPG 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Short PS). No prediction from phytozome.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GCTACTGCCA CTCTCCGCCT CTTCTTCCAC GACTGCATGG TCGAAGGCTA CGATGCCTCA GTCCTCATCT CCTCCAACTC CTTCAACACC GCCCAGCACG ATGCCGACAT CAGCCTCTCC 
CTCCCAGGC 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GCTACTGCCA CTCTCCGCCT CTTCTTCCAC GACTGCATGG TCGAAGGCTA CGATGCCTCA GTCCTCATCT CCTCCAACTC CTTCAACACC GCCCAGCACG ATGCCGACAT CAGCCTCTCC 
CTCCCAGGC 

Retrieve as FASTA