Entry information : VvPrx[P]72
Entry ID 10082
Creation 2012-01-05 (Qiang LI)
Last sequence changes 2012-01-05 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-17 (Christophe Dunand)
Peroxidase information: VvPrx[P]72
Name VvPrx[P]72
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Vitaceae Vitis
Organism Vitis vinifera (Grape)    [TaxId: 29760 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VvPrx[P]72
start..stop
S start..stop
VvPrx[P]71 88 2e-26 1..43 1..43
VvPrx[P]74 87 1e-25 1..43 14..56
VvPrx[P]69 87 1e-25 2..43 1..42
VvPrx[P]73 87 1e-25 1..43 17..59
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 20163005..20163133 129  
join(20163005..20163133)


exon

Literature and cross-references VvPrx[P]72
DNA ref. Phytozome 12:   chr13 (20163005..20163133)
Protein sequence: VvPrx[P]72
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   43
PWM (Da):   %s   4586.18  
PI (pH):   %s   4.19
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATATLRLFFH DCMVEGYDAS VLISSNSFNT TQHDADISLS LPG 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Short PS). No prediction from phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCTACTGCCA CTCTCCGCCT CTTCTTCCAC GACTGCATGG TCGAAGGCTA TGATGCCTCA GTCCTCATCT CCTCCAACTC CTTCAACACC ACCCAGCACG ACGCCGACAT CAGCCTCTCC 
CTCCCAGGC 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCTACTGCCA CTCTCCGCCT CTTCTTCCAC GACTGCATGG TCGAAGGCTA TGATGCCTCA GTCCTCATCT CCTCCAACTC CTTCAACACC ACCCAGCACG ACGCCGACAT CAGCCTCTCC 
CTCCCAGGC 

Retrieve as FASTA