Entry information : VvPrx[P]74
Entry ID 10084
Creation 2012-01-05 (Qiang LI)
Last sequence changes 2012-01-05 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-17 (Christophe Dunand)
Peroxidase information: VvPrx[P]74
Name VvPrx[P]74
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Vitaceae Vitis
Organism Vitis vinifera (Grape)    [TaxId: 29760 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VvPrx[P]74
start..stop
S start..stop
VvPrx[P]73 150 6e-50 1..77 3..80
VvPrx92 150 8e-50 1..77 3..79
VvPrx[P]70 146 1e-48 1..77 1..77
VvPrx[P]100 138 2e-45 1..77 1..77
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 8073325..8073558 234  
complement(join(8073325..8073558))


exon

Literature and cross-references VvPrx[P]74
DNA ref. Phytozome 12:   chr6 (8073558..8073325)
Protein sequence: VvPrx[P]74
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   77
PWM (Da):   %s   8177.94  
PI (pH):   %s   4.3
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

EIISTKEIND PTTATATLRL FFHDCMVEGY DASVLISSNS FNTAQHDADI NLSLPGNTVS IHPDCTSLAS PVISHHS 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Short PS). No prediction from phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GAGATCATAA GCACCAAGGA AATCAACGAC CCCACCACAG CTACTGCCAC TCTTCGCCTC TTCTTCCACG ACTGCATGGT CGAAGGCTAC GACGCCTCAG TCCTCATCTC CTCCAACTCC 
TTCAACACCG CCCAGCACGA CGCCGACATC AACCTCTCCC TCCCAGGCAA TACTGTATCA ATACATCCAG ATTGTACGAG TCTTGCCTCT CCAGTCATCA GTCATCATTC ATGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GAGATCATAA GCACCAAGGA AATCAACGAC CCCACCACAG CTACTGCCAC TCTTCGCCTC TTCTTCCACG ACTGCATGGT CGAAGGCTAC GACGCCTCAG TCCTCATCTC CTCCAACTCC 
TTCAACACCG CCCAGCACGA CGCCGACATC AACCTCTCCC TCCCAGGCAA TACTGTATCA ATACATCCAG ATTGTACGAG TCTTGCCTCT CCAGTCATCA GTCATCATTC ATGA 

Retrieve as FASTA