Entry information : VvPrx[P]100
Entry ID 10085
Creation 2012-01-05 (Qiang LI)
Last sequence changes 2012-01-05 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-17 (Christophe Dunand)
Peroxidase information: VvPrx[P]100
Name VvPrx[P]100
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Vitaceae Vitis
Organism Vitis vinifera (Grape)    [TaxId: 29760 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VvPrx[P]100
start..stop
S start..stop
VvPrx[P]74 138 2e-45 1..77 1..77
VvPrx[P]73 136 2e-44 1..77 3..80
VvPrx92 131 2e-42 1..77 3..79
VvPrx[P]70 128 3e-41 1..77 1..77
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 16523089..16523319 231  
join(16523089..16523319)


exon

Literature and cross-references VvPrx[P]100
DNA ref. Phytozome 12:   chr10 (16523089..16523319)
Protein sequence: VvPrx[P]100
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   76
PWM (Da):   %s   8159.01  
PI (pH):   %s   4.48
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

EIISTKEINV PTIATATLRL FFHDCMVEGY DASVLISSNS FNTT*HDADI NLSFPSNTVS IHPDCTSLAS PVISRHS 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Short PS with stop in it). No prediction from phytozome.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GAGATCATAA GCACCAAGGA AATCAACGTC CCTACCATAG CTACTGCCAC TCTTCGCCTC TTCTTCCACG ACTGCATGGT CGAAGGCTAC GATGCCTCAG TCCTCATCTC CTCCAACTCC 
TTCAACACTA CCTAGCACGA CGCCGACATC AACCTCTCCT TCCCAAGCAA TACTGTATCA ATACATCCAG ATTGTACGAG TCTTGCCTCT CCAGTCATCA GTCGTCATTC A 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GAGATCATAA GCACCAAGGA AATCAACGTC CCTACCATAG CTACTGCCAC TCTTCGCCTC TTCTTCCACG ACTGCATGGT CGAAGGCTAC GATGCCTCAG TCCTCATCTC CTCCAACTCC 
TTCAACACTA CCTAGCACGA CGCCGACATC AACCTCTCCT TCCCAAGCAA TACTGTATCA ATACATCCAG ATTGTACGAG TCTTGCCTCT CCAGTCATCA GTCGTCATTC A 

Retrieve as FASTA