Entry information : PmDyPrx
Entry ID 10135
Creation 2012-01-09 (Christophe Dunand)
Last sequence changes 2012-01-09 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-01-26 (Christophe Dunand)
Peroxidase information: PmDyPrx
Name PmDyPrx
Class DyP-type peroxidase B    [Orthogroup: DyPrxB001]
Taxonomy Eukaryota Fungi Ascomycota Eurotiomycetes Trichocomaceae Penicillium
Organism Penicillium marneffei    [TaxId: 37727 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmDyPrx
start..stop
S start..stop
TstDyPrx01 533 0 2..316 60..375
PEchDyPrx01 474 2e-170 7..316 8..314
HpulDyPrx 473 5e-170 1..315 1..314
OmaiDyPrx 467 8e-168 6..316 5..312
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1800364..1801314 951  
join(1800364..1801314)


exon

Literature and cross-references PmDyPrx
Protein ref. UniProtKB:   B6QFT7 [Incorrect prediction]
DNA ref. GenBank:   NW_002196663.1 (1800364..1801314)
Protein sequence: PmDyPrx
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   316
PWM (Da):   %s   34653.65  
PI (pH):   %s   4.65
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSAGTAVSIQ PVDTPLTASA IFLVLTIRNA DEDSLQNIRS ILAGIGGLSK NVAIRDPNAA FACTAAIGAD IWDLLTGLPR PAELHPFREI KGKKHVAIST PGDLLFHIRS ERRDLCFEFE  RQLLDQFGDM VEVVDETNGF RYFDLRDLLG FVDGTANPVG PNVHPAILVA EEDDAQNVGG SYIVIQKYLH DLTAWKKLST EQQEAIIGRT KFDNIELDDA GANQQKAHKT LTTIEDEDGN 
EQSIVRDNMP FGSPASGEFG TYFIGYSRRL WVIERMLENM FIGNPPGLHD RILDFSRPVT GTAFFAPSAS VLSKLG 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron). Incorrect prediction from TREMBL (longer PS: one short intron and one short exon to obtain the start!!!)
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGTGCCG GCACAGCAGT CAGCATTCAG CCAGTTGATA CACCGCTCAC AGCATCGGCG ATCTTTCTGG TCCTAACTAT TAGGAATGCC GACGAAGACT CCTTGCAAAA TATCCGCTCA  ATATTAGCGG GCATTGGCGG TCTCTCAAAG AATGTGGCTA TTCGCGATCC AAACGCTGCC TTTGCATGCA CCGCAGCCAT CGGCGCTGAT ATCTGGGATC TCCTCACCGG TCTTCCACGG  CCGGCAGAGC TACATCCATT TCGCGAAATA AAGGGAAAGA AGCATGTTGC TATCTCCACG CCCGGTGACC TATTATTTCA CATACGCTCA GAGCGCCGGG ACTTGTGTTT CGAATTCGAA  CGACAGCTAC TAGATCAATT CGGGGATATG GTCGAAGTAG TCGATGAAAC CAATGGTTTC CGCTATTTTG ACTTGCGCGA CCTCCTTGGG TTTGTGGATG GCACAGCCAA CCCCGTGGGG  CCCAATGTGC ACCCTGCGAT CCTCGTTGCG GAGGAAGATG ATGCACAAAA CGTTGGAGGC AGTTATATAG TCATTCAAAA GTACTTGCAT GACCTTACGG CCTGGAAGAA ACTTTCTACG  GAGCAGCAGG AAGCGATCAT CGGCCGGACC AAGTTCGACA ATATAGAGCT GGATGATGCG GGAGCAAACC AACAGAAAGC ACACAAGACG CTGACCACCA TCGAGGATGA AGATGGCAAC  GAGCAGAGTA TTGTGCGAGA CAATATGCCC TTTGGGTCTC CCGCATCCGG CGAGTTCGGT ACGTACTTTA TTGGCTACTC CAGGCGTCTG TGGGTGATTG AGCGCATGCT GGAGAATATG 
TTTATTGGGA ATCCTCCAGG CTTGCATGAT CGGATTCTGG ACTTCTCGCG GCCAGTGACC GGCACTGCTT TCTTTGCGCC CTCTGCAAGT GTACTTAGTA AATTAGGCTA G 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGTGCCG GCACAGCAGT CAGCATTCAG CCAGTTGATA CACCGCTCAC AGCATCGGCG ATCTTTCTGG TCCTAACTAT TAGGAATGCC GACGAAGACT CCTTGCAAAA TATCCGCTCA  ATATTAGCGG GCATTGGCGG TCTCTCAAAG AATGTGGCTA TTCGCGATCC AAACGCTGCC TTTGCATGCA CCGCAGCCAT CGGCGCTGAT ATCTGGGATC TCCTCACCGG TCTTCCACGG  CCGGCAGAGC TACATCCATT TCGCGAAATA AAGGGAAAGA AGCATGTTGC TATCTCCACG CCCGGTGACC TATTATTTCA CATACGCTCA GAGCGCCGGG ACTTGTGTTT CGAATTCGAA  CGACAGCTAC TAGATCAATT CGGGGATATG GTCGAAGTAG TCGATGAAAC CAATGGTTTC CGCTATTTTG ACTTGCGCGA CCTCCTTGGG TTTGTGGATG GCACAGCCAA CCCCGTGGGG  CCCAATGTGC ACCCTGCGAT CCTCGTTGCG GAGGAAGATG ATGCACAAAA CGTTGGAGGC AGTTATATAG TCATTCAAAA GTACTTGCAT GACCTTACGG CCTGGAAGAA ACTTTCTACG  GAGCAGCAGG AAGCGATCAT CGGCCGGACC AAGTTCGACA ATATAGAGCT GGATGATGCG GGAGCAAACC AACAGAAAGC ACACAAGACG CTGACCACCA TCGAGGATGA AGATGGCAAC  GAGCAGAGTA TTGTGCGAGA CAATATGCCC TTTGGGTCTC CCGCATCCGG CGAGTTCGGT ACGTACTTTA TTGGCTACTC CAGGCGTCTG TGGGTGATTG AGCGCATGCT GGAGAATATG 
TTTATTGGGA ATCCTCCAGG CTTGCATGAT CGGATTCTGG ACTTCTCGCG GCCAGTGACC GGCACTGCTT TCTTTGCGCC CTCTGCAAGT GTACTTAGTA AATTAGGCTA G 

Retrieve as FASTA