View Redoxidase 1038

Entry information : OsPrx28(LOC_Os02g14460)

Entry ID	1038
Creation	2005-06-16 (Filippo Passardi)
Last sequence changes	2005-06-16 (Filippo Passardi)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2010-08-03 (Marie Brette (Scipio))

Peroxidase information: OsPrx28(LOC_Os02g14460)

Name

OsPrx28(LOC_Os02g14460)

Class

Class III peroxidase [Orthogroup: Prx045]*

Taxonomy

Viridiplantae (green plants); Streptophyta; Angiospermae; Monocotyledons

Organism

Oryza sativa ssp japonica cv Nipponbare [TaxId: 39947 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	OsPrx28 start..stop	S start..stop
TaPrx58-1D	464	4.19e-166	36..333	23..318
SiPrx77	464	4.48e-166	4..333	2..320
TaPrx58-1B	461	9.6e-165	36..333	23..318
BdiPrx99	457	2.11e-163	36..333	24..319

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '1038' 'join(7958881..7959123,7959225..7959422,7959520..7960083)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	7958881..7959123	241	N° 2	7959225..7959422	196	N° 3	7959520..7960083	562
join(7958881..7959123,7959225..7959422,7959520..7960083)

Literature and cross-references OsPrx28(LOC_Os02g14460)

Literature	Passardi F., Longet, D., Penel C. and Dunand, C. The class III peroxidase multigenic family in rice and its evolution in land plants Phytochemistry, 65 (13), 1879-1893 (2004)
Protein ref.	UniProtKB: Q6ER46
DNA ref.	GenBank: NC_008395.1 (7958881..7960080)

Protein sequence: OsPrx28(LOC_Os02g14460)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	334 (307)
PWM (Da):	35330.71 (32639.3)
PI (pH):	7.26 (6.87)	Peptide Signal:	cut: 28 range:28-334

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAAASSTTTRFCLLLALVLPMISSAAAGDDALPLPMTPSYYRKSC
PTLEAIVRGTMLSAIKAERRMGASILRLFFHDCFVQGCDASILLDDVPSKGFVGEKTAGPNTNSIRGYEVIDKIKANVEAACPGVVSCADILALAAREGVNLLGGPSWEVPLGRRDSTTASKSEADSDLPGPSSSLADLVAAFGKKGLAPRDMTAL
SGAHTIGYAQCQFFRGHIYNDTNVDPLFAAERRRRCPAASGSGDSNLAPLDDMTALAFDNAYYRDLVGRRGLLHSDQELFNGGSQDERVKKYSTDPDLFAGDFVAAMIKMGKICPLTGAA
GQIRKNCRVVNSS*

Retrieve as FASTA

Remarks

chromosome 2; no ESTs (NIAS DNA database and TIGR)

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTGCAGCTTCGTCTACTACGACTCGTTTTTGCCTTCTCCTTGCGCTCGTCCTGCCGATGATTTCCTCCGCCGCCGCCGGCGACGACGCGCTGCCGCTGCCCATGACACCGTCGTAC
TACCGCAAGTCGTGCCCAACACTCGAGGCCATCGTGCGCGGCACCATGCTCAGTGCCATCAAAGCCGAGCGCCGGATGGGCGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTC
CAGAGGTAGATGATCCTAGCTAAGCTTCATTTCTTCCTGCTCATTGGGCGGATGATCTATGGAGATCTTGAAGCAATGCAAGCTCACATTGCTTGTGATTGATCAGGGTTGCGATGCATC
GATTCTTCTCGACGACGTGCCGTCGAAGGGGTTCGTCGGCGAGAAGACCGCGGGGCCCAACACCAACTCCATCCGCGGCTACGAGGTCATCGACAAGATCAAGGCCAACGTCGAGGCCGC
CTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCCCGCGAAGGCGTCAACCTGTGGTATGTACGTGTTTGGTTACCGCGTTTGGTTACCGATGGTGATTTCGGGGCCGG
TTTCGTAACAACATTTCTGCACTGCACACGCAATGCAATGCAGCTCGGCGGGCCGAGCTGGGAGGTGCCGCTGGGGCGGCGCGACTCGACGACGGCGAGCAAGAGCGAGGCGGACAGCGA
CCTGCCGGGGCCGTCGTCCAGCCTCGCCGACCTCGTCGCGGCGTTCGGCAAGAAGGGCCTGGCGCCGCGCGACATGACGGCGCTCTCCGGCGCGCACACCATCGGCTACGCCCAGTGCCA
GTTCTTCCGCGGCCACATCTACAACGACACCAACGTCGACCCGCTGTTCGCCGCCGAGCGCCGCCGCCGCTGCCCCGCCGCGTCCGGCTCCGGCGACTCCAACCTGGCGCCGCTCGACGA
CATGACGGCGCTCGCCTTCGACAACGCCTACTACCGCGACCTGGTCGGCCGCCGCGGCCTGCTCCACTCCGACCAGGAGCTCTTCAACGGCGGCTCGCAGGACGAGCGGGTGAAGAAGTA
CAGCACCGACCCGGACCTCTTCGCCGGCGACTTCGTGGCGGCGATGATAAAGATGGGGAAGATATGCCCGCTCACCGGAGCAGCCGGCCAGATCAGGAAGAACTGCAGGGTGGTCAACAG
CAGCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTGCAGCTTCGTCTACTACGACTCGTTTTTGCCTTCTCCTTGCGCTCGTCCTGCCGATGATTTCCTCCGCCGCCGCCGGCGACGACGCGCTGCCGCTGCCCATGACACCGTCGTAC
TACCGCAAGTCGTGCCCAACACTCGAGGCCATCGTGCGCGGCACCATGCTCAGTGCCATCAAAGCCGAGCGCCGGATGGGCGCCTCCATCCTCCGCCTCTTCTTCCACGACTGCTTCGTC
CAGGGTTGCGATGCATCGATTCTTCTCGACGACGTGCCGTCGAAGGGGTTCGTCGGCGAGAAGACCGCGGGGCCCAACACCAACTCCATCCGCGGCTACGAGGTCATCGACAAGATCAAG
GCCAACGTCGAGGCCGCCTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCCCGCGAAGGCGTCAACCTGCTCGGCGGGCCGAGCTGGGAGGTGCCGCTGGGGCGGCGC
GACTCGACGACGGCGAGCAAGAGCGAGGCGGACAGCGACCTGCCGGGGCCGTCGTCCAGCCTCGCCGACCTCGTCGCGGCGTTCGGCAAGAAGGGCCTGGCGCCGCGCGACATGACGGCG
CTCTCCGGCGCGCACACCATCGGCTACGCCCAGTGCCAGTTCTTCCGCGGCCACATCTACAACGACACCAACGTCGACCCGCTGTTCGCCGCCGAGCGCCGCCGCCGCTGCCCCGCCGCG
TCCGGCTCCGGCGACTCCAACCTGGCGCCGCTCGACGACATGACGGCGCTCGCCTTCGACAACGCCTACTACCGCGACCTGGTCGGCCGCCGCGGCCTGCTCCACTCCGACCAGGAGCTC
TTCAACGGCGGCTCGCAGGACGAGCGGGTGAAGAAGTACAGCACCGACCCGGACCTCTTCGCCGGCGACTTCGTGGCGGCGATGATAAAGATGGGGAAGATATGCCCGCTCACCGGAGCA
GCCGGCCAGATCAGGAAGAACTGCAGGGTGGTCAACAGCAGCTGA

Retrieve as FASTA