Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
450 (428) |
PWM (Da): |
47730.34 (45491.0) |
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PI (pH):
| 5.75 (5.26) |
Peptide Signal:
| cut: 23 range:23-450 |
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Sequence 0
Send to BLAST
Send to Peroxiscan
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
MRPSFLLLLV VFAGVLAGGA RAGPPLAGEN LPGQLLPGEK PPGQPLPGQP LPGQPLPGQS LPGQPLPGQP LPGQSLPGQP LVGEKPPGQP LPGQPLPGQS LPGQPLPGQP LVGEKPPGQP
LVPGQPLVGE KPPGQPLGGD KLSPDYYAQT CPRAERIVAE VVQSKQMANP TTAAGVLRLF FHDCFVSGCD ASVLVAATAF EKSEQSAEIN HSLPGDAFDA VVRAKLALEL ECPEVVSCAD
ILALAARVLI TMTGGPRYPI SFGRKDSLTS SPTAPDKEMP QSNFTMDQVI KLFQDKGFTV QEMVALSGGH TLGFSHCKEF AQRIYDYQGK PGNVDPTMNP VLSKGLQTAC KEYLKDPTIA
AFNDVMTPGK FDNMYFVNLE RGLGLLATDE EMWSDKRTQP FVKLYASNPT AFFDDFSRAI DKLSLFGVKT GAAGEIRRRC DTYNHGPMPK
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Retrieve as FASTA
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Remarks |
Complete sequence from genomic (chromo 2, no intron) and 67 ESTs. Long PS containing repeated residue (DNA GC rich) and not conserved in other monocot otrthologs. Two ESTs confirmed this PS (from 1 to 120). |
DNA ►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGCGTCCGT CCTTCCTCCT CCTCCTCGTC GTGTTTGCCG GCGTCTTGGC CGGCGGGGCG CGCGCGGGGC CGCCGTTGGC GGGCGAGAAT CTGCCGGGGC AGCTGTTGCC GGGCGAGAAG
CCGCCGGGGC AGCCGTTGCC GGGGCAGCCG TTGCCGGGGC AACCGTTGCC AGGGCAATCG TTGCCGGGGC AGCCGTTGCC GGGGCAGCCG TTGCCAGGGC AATCGTTGCC GGGGCAGCCT
TTGGTGGGCG AGAAGCCGCC GGGGCAACCG TTGCCGGGGC AGCCGTTGCC AGGGCAATCG TTGCCGGGGC AGCCGTTGCC GGGGCAGCCG TTGGTGGGCG AGAAGCCGCC GGGGCAGCCG
TTGGTGCCGG GGCAGCCGTT GGTGGGCGAG AAGCCGCCGG GGCAGCCGTT GGGGGGCGAC AAGCTGTCGC CGGATTACTA CGCCCAGACG TGCCCGCGCG CGGAGCGGAT CGTCGCGGAG
GTGGTCCAGT CGAAGCAGAT GGCGAACCCG ACGACGGCGG CCGGGGTGCT CCGCCTCTTC TTCCACGACT GCTTCGTCAG CGGGTGCGAC GCGTCGGTGC TGGTGGCGGC CACGGCGTTC
GAGAAGTCGG AGCAGAGCGC GGAGATCAAC CACTCGCTGC CGGGCGACGC GTTCGACGCC GTGGTGCGCG CCAAGCTCGC CCTGGAGCTC GAGTGCCCCG AGGTGGTGTC GTGCGCCGAC
ATCCTGGCGC TGGCGGCGCG CGTGCTCATC ACCATGACCG GCGGCCCACG CTACCCGATC TCCTTCGGCC GCAAGGACTC GCTGACGTCG TCGCCGACGG CGCCCGACAA GGAGATGCCG
CAGTCCAACT TCACCATGGA CCAGGTGATC AAGTTGTTCC AGGACAAGGG TTTCACGGTG CAGGAGATGG TGGCGCTGTC CGGCGGCCAC ACGCTGGGAT TCTCGCACTG CAAGGAGTTC
GCGCAGAGGA TCTACGACTA CCAGGGGAAG CCCGGGAACG TGGACCCGAC GATGAACCCG GTGCTGAGCA AGGGCTTGCA GACGGCGTGC AAGGAGTACC TCAAGGACCC GACGATCGCG
GCGTTCAACG ACGTGATGAC GCCCGGGAAG TTCGACAACA TGTACTTCGT GAACCTGGAG CGAGGGCTCG GCCTCCTCGC CACGGACGAG GAGATGTGGT CGGACAAGCG CACCCAGCCG
TTCGTGAAGC TCTACGCGTC CAACCCCACC GCCTTCTTCG ACGACTTCTC CCGCGCCATC GACAAGCTCA GCCTCTTCGG CGTCAAGACC GGCGCCGCCG GCGAGATCAG GCGGCGCTGC
GACACCTACA ACCACGGGCC CATGCCCAAG TGA
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Retrieve as FASTA
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CDS►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGCGTCCGT CCTTCCTCCT CCTCCTCGTC GTGTTTGCCG GCGTCTTGGC CGGCGGGGCG CGCGCGGGGC CGCCGTTGGC GGGCGAGAAT CTGCCGGGGC AGCTGTTGCC GGGCGAGAAG
CCGCCGGGGC AGCCGTTGCC GGGGCAGCCG TTGCCGGGGC AACCGTTGCC AGGGCAATCG TTGCCGGGGC AGCCGTTGCC GGGGCAGCCG TTGCCAGGGC AATCGTTGCC GGGGCAGCCT
TTGGTGGGCG AGAAGCCGCC GGGGCAACCG TTGCCGGGGC AGCCGTTGCC AGGGCAATCG TTGCCGGGGC AGCCGTTGCC GGGGCAGCCG TTGGTGGGCG AGAAGCCGCC GGGGCAGCCG
TTGGTGCCGG GGCAGCCGTT GGTGGGCGAG AAGCCGCCGG GGCAGCCGTT GGGGGGCGAC AAGCTGTCGC CGGATTACTA CGCCCAGACG TGCCCGCGCG CGGAGCGGAT CGTCGCGGAG
GTGGTCCAGT CGAAGCAGAT GGCGAACCCG ACGACGGCGG CCGGGGTGCT CCGCCTCTTC TTCCACGACT GCTTCGTCAG CGGGTGCGAC GCGTCGGTGC TGGTGGCGGC CACGGCGTTC
GAGAAGTCGG AGCAGAGCGC GGAGATCAAC CACTCGCTGC CGGGCGACGC GTTCGACGCC GTGGTGCGCG CCAAGCTCGC CCTGGAGCTC GAGTGCCCCG AGGTGGTGTC GTGCGCCGAC
ATCCTGGCGC TGGCGGCGCG CGTGCTCATC ACCATGACCG GCGGCCCACG CTACCCGATC TCCTTCGGCC GCAAGGACTC GCTGACGTCG TCGCCGACGG CGCCCGACAA GGAGATGCCG
CAGTCCAACT TCACCATGGA CCAGGTGATC AAGTTGTTCC AGGACAAGGG TTTCACGGTG CAGGAGATGG TGGCGCTGTC CGGCGGCCAC ACGCTGGGAT TCTCGCACTG CAAGGAGTTC
GCGCAGAGGA TCTACGACTA CCAGGGGAAG CCCGGGAACG TGGACCCGAC GATGAACCCG GTGCTGAGCA AGGGCTTGCA GACGGCGTGC AAGGAGTACC TCAAGGACCC GACGATCGCG
GCGTTCAACG ACGTGATGAC GCCCGGGAAG TTCGACAACA TGTACTTCGT GAACCTGGAG CGAGGGCTCG GCCTCCTCGC CACGGACGAG GAGATGTGGT CGGACAAGCG CACCCAGCCG
TTCGTGAAGC TCTACGCGTC CAACCCCACC GCCTTCTTCG ACGACTTCTC CCGCGCCATC GACAAGCTCA GCCTCTTCGG CGTCAAGACC GGCGCCGCCG GCGAGATCAG GCGGCGCTGC
GACACCTACA ACCACGGGCC CATGCCCAAG TGA
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Retrieve as FASTA
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