Entry information : EgrPrx[P]180
Entry ID 10471
Creation 2012-02-07 (Qiang Li)
Last sequence changes 2012-02-16 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-03-11 (Christophe Dunand)
Peroxidase information: EgrPrx[P]180
Name EgrPrx[P]180
Class Class III peroxidase     [Orthogroup: Prx010]*
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus grandis    [TaxId: 71139 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EgrPrx[P]180
start..stop
S start..stop
EglPrx[P]180 375 9.78e-136 1..183 1..183
EguPrx[P]180 369 4.59e-133 1..183 1..183
EcamPrx[P]89 345 2.05e-122 1..183 101..283
EgrPrx[P]89 338 3.44e-119 1..183 109..291
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '10471' 'join(4814..4979,5143..5525)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4814..4979 164 N° 2 5143..5525 381  
join(4814..4979,5143..5525)


exon

Literature and cross-references EgrPrx[P]180
DNA ref. Phytozome 12:   scaffold_1899 (4814..5525)
Protein sequence: EgrPrx[P]180
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   182
PWM (Da):   %s   19281.32  
PI (pH):   %s   5.17
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
LGGPTWTVQLGRRDSTTASLSAANSDIPSPLSDLSGLISDFANKGFSAKEMVALSGTHTIGRARCFLFRARIYNEENIDPAFAMS*RQNCPGAGGDGNLVPLETGNGDMFNNNCFKDLVS
MKGLLHSDQQLFNNGSTDAQVKAYSLDSASFFADLANAMVKMGNLSPLTGTDGEVWTNCRKV

Retrieve as FASTA  
Remarks Pseudogene from genomic (Stop in frame, 5' end is missing). No prediction from Phytozome. No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TTGGGTGGACCTACGTGGACCGTTCAACTAGGTAGGAGAGATTCAACCACCGCAAGTTTGAGCGCTGCAAACAGCGATATTCCTTCGCCACTCTCGGACCTTAGCGGTCTCATATCTGAC
TTCGCTAATAAGGGATTCTCTGCCAAAGAAATGGTCGCCCTCTCAG
AGGTGTTTCATCTAATTTACTTGGCCATGGCAAAAAATGTCATTAATCTAAGAGAGAAGTATCATTCTTTTGGT
CTTCGCACTATGGAAAGGCTTTCTTTGATTGTCGCTGAAAGAAAATTGCCCGACCATGATCCACCGTCTTACATGCGCTCTTGTGCCGCAGGAACTCACACGATAGGCCGAGCAAGGTGC
TTCCTGTTCCGTGCTCGCATCTACAACGAGGAGAACATCGACCCCGCATTCGCCATGTCGTAGAGGCAGAACTGTCCCGGTGCGGGCGGGGATGGTAATCTCGTGCCGCTTGAGACCGGC
AACGGCGACATGTTCAACAATAACTGCTTCAAGGACCTAGTGAGCATGAAGGGCCTCCTGCACTCGGACCAGCAGCTGTTCAACAACGGATCCACCGACGCGCAGGTGAAGGCCTACAGC
CTTGACTCGGCCTCCTTCTTCGCCGATCTGGCCAATGCCATGGTGAAGATGGGGAACCTCAGCCCCCTCACAGGAACGGATGGGGAAGTCTGGACCAACTGCAGGAAAGTTAAT

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TTGGGTGGACCTACGTGGACCGTTCAACTAGGTAGGAGAGATTCAACCACCGCAAGTTTGAGCGCTGCAAACAGCGATATTCCTTCGCCACTCTCGGACCTTAGCGGTCTCATATCTGAC
TTCGCTAATAAGGGATTCTCTGCCAAAGAAATGGTCGCCCTCTCAG
GAACTCACACGATAGGCCGAGCAAGGTGCTTCCTGTTCCGTGCTCGCATCTACAACGAGGAGAACATCGACCCC
GCATTCGCCATGTCGTAGAGGCAGAACTGTCCCGGTGCGGGCGGGGATGGTAATCTCGTGCCGCTTGAGACCGGCAACGGCGACATGTTCAACAATAACTGCTTCAAGGACCTAGTGAGC
ATGAAGGGCCTCCTGCACTCGGACCAGCAGCTGTTCAACAACGGATCCACCGACGCGCAGGTGAAGGCCTACAGCCTTGACTCGGCCTCCTTCTTCGCCGATCTGGCCAATGCCATGGTG
AAGATGGGGAACCTCAGCCCCCTCACAGGAACGGATGGGGAAGTCTGGACCAACTGCAGGAAAGTTAAT

Retrieve as FASTA