Entry information : EgrPrx[P]170
Entry ID 10476
Creation 2012-02-08 (Qiang Li)
Last sequence changes 2012-02-16 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-03-11 (Christophe Dunand)
Peroxidase information: EgrPrx[P]170
Name EgrPrx[P]170
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus grandis    [TaxId: 71139 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EgrPrx[P]170
start..stop
S start..stop
EcamPrx[P]170 302 2e-107 1..158 1..158
EguPrx[P]170 276 2.56e-97 1..161 1..152
EglPrx[P]170 224 2.01e-77 54..161 1..108
EcamPrx[P]166 186 1.35e-60 1..161 42..220
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '10476' 'complement(join(15938828..15938875,15938909..15939346))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 15938909..15939346 436 N° 2 15938828..15938875 46  
complement(join(15938828..15938875,15938909..15939346))


exon

Literature and cross-references EgrPrx[P]170
DNA ref. Phytozome 12:   scaffold_11 (15939346..15938828)
Protein sequence: EgrPrx[P]170
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   161
PWM (Da):   %s   18065.15 Transmb domain:   %s   i34-56o
PI (pH):   %s   9.25
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
SWQVQLGRRILSMTSLSAANTDILAPILNFNDLITSFSNKGFTTKEMMALLGSHAIDNARCTTIQSWLYNESNINLSFAPPPRHHEPYVLRQFRNLVNQKGLLHLDLQLFSGNSMNDQVT
IYINILNLFWSDFANAMVKMGGLSPL
TGSSNRIRMNCREVN*

Retrieve as FASTA  
Remarks Pseudogene from genomic (5' end is missing). No prediction from Phytozome. No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AGTTGGCAAGTTCAGCTGGGAAGAAGAATTTTGTCCATGACGAGCCTAAGCGCCGCTAATACTGATATCCTAGCTCCAATTCTTAATTTCAATGACCTCATCACTTCTTTCTCCAACAAA
GGGTTCACTACCAAAGAAATGATGGCACTCTTGGGATCCCACGCCATAGACAACGCTAGGTGCACAACGATCCAATCCTGGCTCTACAATGAGAGCAACATAAACTTGTCGTTCGCCCCA
CCCCCGCGGCATCATGAGCCCTACGTCCTTCGACAATTCCGCAACTTAGTAAACCAAAAGGGCCTACTCCACTTGGATCTGCAATTGTTCAGTGGGAATTCAATGAACGATCAAGTGACC
ATCTACATCAACATTTTGAATTTGTTCTGGAGCGACTTTGCTAATGCCATGGTCAAGATGGGAGGCCTTAGCCCTCTC
GCCGTTTTTTTTTTTTAATCGGTCCGACCTCTCACACCGGGT
CTAGCAATCGGATAAGAATGAATTGCAGGGAGGTCAATTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AGTTGGCAAGTTCAGCTGGGAAGAAGAATTTTGTCCATGACGAGCCTAAGCGCCGCTAATACTGATATCCTAGCTCCAATTCTTAATTTCAATGACCTCATCACTTCTTTCTCCAACAAA
GGGTTCACTACCAAAGAAATGATGGCACTCTTGGGATCCCACGCCATAGACAACGCTAGGTGCACAACGATCCAATCCTGGCTCTACAATGAGAGCAACATAAACTTGTCGTTCGCCCCA
CCCCCGCGGCATCATGAGCCCTACGTCCTTCGACAATTCCGCAACTTAGTAAACCAAAAGGGCCTACTCCACTTGGATCTGCAATTGTTCAGTGGGAATTCAATGAACGATCAAGTGACC
ATCTACATCAACATTTTGAATTTGTTCTGGAGCGACTTTGCTAATGCCATGGTCAAGATGGGAGGCCTTAGCCCTCTC
ACCGGGTCTAGCAATCGGATAAGAATGAATTGCAGGGAGGTC
AATTGA

Retrieve as FASTA