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Entry information : MlpLDS02
Entry ID 10662
Creation 2012-03-02 (Christophe Dunand)
Last sequence changes 2012-03-02 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2013-08-20 (Catherine Mathe (Scipio))
Peroxidase information: MlpLDS02
Name MlpLDS02
Class Linoleate diol synthase (PGHS like)    [Orthogroup: LDS001]
Taxonomy Eukaryota Fungi Basidiomycota Melampsoraceae Melampsora
Organism Melampsora laricis-populina    [TaxId: 203908 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value MlpLDS02
start..stop		 S start..stop
MlpLDS01 1031 0 2..825 7..793
MlpLDS03 853 0 2..825 10..745
ScomLDS02 406 6.63e-127 93..783 61..661
PplLDS02 381 2.56e-118 125..715 3..516
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 264704..264856 151 N° 2 264298..264624 325 N° 3 263932..264217 284 N° 4 263560..263844 283
N° 5 263321..263493 171 N° 6 263089..263215 125 N° 7 262981..263015 33 N° 8 262865..262907 41
N° 9 262704..262801 96 N° 10 262426..262640 213 N° 11 262223..262319 95 N° 12 261888..262133 244
N° 13 261738..261804 65 N° 14 261363..261617 253 N° 15 261210..261301 90  
complement(join(261210..261301,261363..261617,261738..261804,261888..262133,2622 23..262319,262426..262640,262704..262801,262865..262907,262981..263015,263089..2 63215,263321..263493,263560..263844,263932..264217,264298..264624,264704..264856 ))


exon

Literature and cross-references MlpLDS02
DNA ref. JGI genome:   scaffold_20 (264856..261210)
Cluster/Prediction ref. JGI gene:   106834
Protein sequence: MlpLDS02
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   832 (307)
PWM (Da):   %s   92205.11 (32420.3)  
PI (pH):   %s   6.19 (7.70) Peptide Signal:   %s   cut: 19 range:19-325
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPYKNQANQPKPGEALIQSAGYTHVSQIGSAADLPTLSNFPLWRKIAQTEETLGTVSNYLFARGGQHGDYSNYEDSALTDPKPPTSLIYLIIQQILAGTVPSNLVLTKNILTSIGNPFND
RNFQLEQVVAFLARTGRKRHQGPNKFVNAIQGQFINLLWTDLPHPPTTNLDPKHRFRTPDGRDNNLTGLPMLGAANQPYSRSVKPVHPVPAGMAEPEEIFDAILRRPSGFEGFTPHPAQV
SSLFFGFANLIIHDLFWSNNGPEVKTCDGSESKEGSEGAPTGGTSNQWQNKTSSYASLDPLYGTNAKEQWQIRDKSQLGRGLLHNDTFSSNRLLLMPPSSSALLVLFSRNHNRAARKVLE
LNERGAWQSDLSQLTPEQLQQQDDEIFGTARHINCAYYAGIILSDYLQAILNTTQVDSNWALDPRAPIKNLLGSTPKATGNSVSVEFNVLYRWHSAVSWSQTQWMEDKFSKALPSRNWDE
MTGAHLAKASALLQKELNAEAGSDPRNWKLSKYETSVPEEGPPELTSEGVYERDAESGKFRDEDIARILRDSTNEVAGTFGARHVPAAMKWIECQGMRTARDVWKLCTLNEFREFIGLKK
HDTFEQWNSDPSVASAMADLVGHPANIPLHVGLNGEESKKPTVGSGVCLPYTISRAILSDASKHSLSVSNPNEVVSDDSLLRYKVSLVRGDRFFTDSASADVMTDWGLNEVQPDPQNDRI
NMFTTISHYSVNRFLSPFLTLPSADNIDFFSVPFVVPKHSYSNMQRIGFQKALNYSLNPPPPSNVGFEQVQNGGKTMVCEMSDTSEVEVQRMGLIFGLASLFANLLDSSVLW*

Retrieve as FASTA  
Remarks Complete sequence from genomic (14 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCTTATAAGAACCAAGCGAATCAACCTAAACCAGGAGAAGCTTTGATACAAAGTGCAGGTTACACCCATGTATCACAAATCGGTTCAGCAGCCGATCTGCCCACCTTATCTAATTTT
CCCCTTTGGCGTAAAATTGCTCAAACTGAAGAAGTGAGTTTTTTGGACCAGAAGTCTCTACCTACATCATCACTTTCCGCTCACTGATTAATGACCATCCATCTTTGTTTAGACACACTA
GGGACTGTCTCCAATTATCTCTTTGCTAGGGGAGGACAACATGGGGATTATAGCAATTATGAAGATTCCGCCTTAACTGATCCCAAGCCACCAACTTCATTGATTTACCTCATCATTCAA
CAAATTCTGGCCGGAACTGTCCCTTCTAATCTCGTGTTAACCAAAAACATTCTCACGAGCATCGGGAATCCTTTCAATGATCGAAATTTTCAGCTTGAGCAAGTCGTGGCTTTTCTCGCG
CGCACTGGAAGAAAGAGACACCAAGGACCTAATAAATTCGTGAATGCTATACAAGGCCAATTCATCAACTTACTATGGACTGTAAGCACCTCTATCACGATTCGTTTTGTTTATTGATAA
AAAGACTGATATGATGTTGATTATCTGCTTCCCCCACTCAGGAGACCTTCCACATCCTCCCACCACCAATCTGGACCCTAAACATCGCTTTAGGACACCCGATGGCCGTGATAACAATCT
TACTGGACTCCCGATGCTTGGAGCTGCCAATCAACCTTATTCAAGATCAGTAAAACCAGTTCATCCTGTGCCAGCTGGCATGGCTGAACCGGAAGAGATATTTGATGCGATCCTTCGTCG
TCCATCGGGCTTCGAAGGTTTCACGCCACACCCTGCTCAGGTGTCCAGCTTATTCTTTGGCTTTGCAAATCTCATCATTCACGACCTGTGTCAGTCTTTCTTCCTGGAATTTTCTCCATC
TCTGGAACTGCACTGATCAAAATCGACACTCAAATCGATCGGATTGCAAACTGTAGTCTCTGGAGCAATAATGGCCCCGAAGTAAAAACATGCGATGGATCCGAATCTAAAGAAGGAAGC
GAAGGCGCCCCAACCGGTGGAACTTCGAATCAATGGCAGAACAAAACTTCGTCCTATGCCTCTTTAGATCCTTTGTACGGGACCAATGCAAAAGAACAATGGCAGATTCGTGATAAAAGC
CAACTCGGCCGTGGTTTATTACACAATGATACATTTTCATCGAACCGATTACTTCTGATGCCACCTTCATCTTCTGCTTTACTCGTACTATTTTCAAGAAATCGTAAGTGATCTCTAAGG
ACCATATTTGTCAATGAAAATACTCAAAACAAATTTTCCAATCATTTAGATATAATCGTGCGGCTAGAAAAGTTCTAGAGCTCAATGAGCGCGGGGCGTGGCAAAGCGACTTGAGTCAAC
TTACTCCAGAGCAATTGCAACAACAAGATGATGAGATCTTTGGTACCGCGCGACATATCAATTGTGCCTACTACGCGGGAATCATCCTCAGTGACTATTTACAAGTTAGTGAAATGCCCC
GAGACTAATGCCACTTGATAGGTCCACAAGAGATATAGAGTTATACAATATCACATCATCTTGACGATTGTCTGCTTTCTCTTACTTAGGCGCTATCTTAAATACTACTCAGGTTGACTC
GAACTGGGCTTTAGATCCTAGAGCTCCGATAAAAAATCTTCTTGGTAGTACTCCAAAGGCTACTGGAAATTCAGTTAGTGTAGAGTTCAATGTTCTTTGTAAGTCACCTTTTTATTGATG
TTACAAGTGATTCAGAGTAGAAAATAATCTTCGTGACATCTTCGGTCATAGATATCGATGGCATTCCGCAGTTTCCTGGTCGCAGACGGTGAGTTACCGTCTCTTTCACAGTTATATCAT
CCTTGGTATTAATTCCCTGCTCTGTAATCTCCTGGTCATAGCACAATGGATGGAAGACAAATTTTCTAAAGCTCTGCCTAGCAGAAGTAAGTCCCGAGCGACCCGTTCTACTTTGCATCT
CCTCATGTCTAATTCTTTGGTGTTTATAGATATTGGGATGAGATGACCGGAGCGCATTTGGCAAAAGCATCTGCTCTCTTGCAAAAAGAGCTGAATGCCGAGGCAGGATCAGATCCTAGA
AATTGGAAGGTCCGTTTTGTGTCGATTTCATAAGCATGTCGTACACGAATTCTAAGTAATTTACTCTTGCAGTTTTATCCAAATATGAAACCAGTGTCCCTGAAGAGGGACCACCGGAGT
TAACATCAGAAGGAGTGTATGAAAGGGATGCCGAAAGTGGCAAATTTCGAGATGAGGATATAGCCAGAATCCTAAGAGATTCGACTAACGAAGTGGCTGGTACGTTTGGAGCTCGACATG
TACCAGCAGCAATGAAATGGATTGAATGTCAGGGAATGCGAACAGCGAGGTAGGCATGATACACTCTAGGCACACCCCTCTCATACTATGGAGAAGATGCTAAATATTATCTTGTTGGAA
CAATTCAAATACATTCTTGTGGGACAAAATCGCAGAGAGATGTTTGGAAATTGTGTACATTGAACGAATTCAGAGAGTTCATTGGTTTGAAAAAACACGATACCTTTGAACAATGGAACT
CTGATCCATCGGTTGTTCGTCATGGTTTTCTTTTCCACCACCACTCTTTGGACCAAATCCTTTCAACTCATCTAACTGCTATTTGATCTATTATGGCTTCAAGGCGCTTCAGCAATGGCA
GATCTCGTTGGACATCCAGCAAATATTCCACTTCATGTTGGTCTGAATGGTGAAGAATCTAAGAAACCGACAGTAGGTTCAGGTGTATGTCTACCTTACACAATCAGTCGAGCTATCCTG
AGTGACGCCAGTAAGCATTCGTTGAGTGTTTCCAATCCAAATGAGGTGGTTTCTGATGATTCATTATTGCGCTACAAAGTTTCGTTGGTCCGAGGCGACAGATTCTTCACAGTGGGTCTT
TTAAGAAATATTCCGTTTCCAGATCACGCCAGTATATCTACCAGATTTGTTTTCTGAAACTCGGTCTGTCTCAGGAGATTCTGCGAGTGCAGATGTGATGACTGATTGGGGCCTTAACGA
GGTACAACCTGATCCGCAAAACGGTTCATTTGGAGGAATGCTGGAGAAGCTGATACGTAACAATATGTTGGCCACCATTCCCACTAATCCTTTCTTAATTATCACAAGAACTAAACTGAA
CAACTCGATTTGATGCTTTTCAGACACCGAATCAATATGTTTACAACGATCTCGCACTACTCTGTAAACCGATTTTTATCACCTTTCTTGACTCTCCCTAGCGCTGATAACATAGACTTC
TTCTCAGTTCCTTTTGTCGTTCCCAAACATTCATATTCGAATATGCAGCGCATAGGGTTTCAAAAAGCTCTCAATTATTCTTTGAACCCTCCCCCACCATCTAATGTCGGATTTGAGCAA
GTCCAAAATGGCGGCAAAACGATGGTTTGCGAGATGTCAGGTGCGCCGCGTTCGAGGATCCCCATTGAAGATGATCACTGATGAGCCTTTTGACCATACAGATATACATCTGAAGTTGAA
GTTCAAAGGATGGGCTTGATCTTTGGATTGGCGAGTCTCTTTGCTAATTTGTTGGACTCAAGTGTGTTGTGGTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCTTATAAGAACCAAGCGAATCAACCTAAACCAGGAGAAGCTTTGATACAAAGTGCAGGTTACACCCATGTATCACAAATCGGTTCAGCAGCCGATCTGCCCACCTTATCTAATTTT
CCCCTTTGGCGTAAAATTGCTCAAACTGAAGAAACACTAGGGACTGTCTCCAATTATCTCTTTGCTAGGGGAGGACAACATGGGGATTATAGCAATTATGAAGATTCCGCCTTAACTGAT
CCCAAGCCACCAACTTCATTGATTTACCTCATCATTCAACAAATTCTGGCCGGAACTGTCCCTTCTAATCTCGTGTTAACCAAAAACATTCTCACGAGCATCGGGAATCCTTTCAATGAT
CGAAATTTTCAGCTTGAGCAAGTCGTGGCTTTTCTCGCGCGCACTGGAAGAAAGAGACACCAAGGACCTAATAAATTCGTGAATGCTATACAAGGCCAATTCATCAACTTACTATGGACT
GACCTTCCACATCCTCCCACCACCAATCTGGACCCTAAACATCGCTTTAGGACACCCGATGGCCGTGATAACAATCTTACTGGACTCCCGATGCTTGGAGCTGCCAATCAACCTTATTCA
AGATCAGTAAAACCAGTTCATCCTGTGCCAGCTGGCATGGCTGAACCGGAAGAGATATTTGATGCGATCCTTCGTCGTCCATCGGGCTTCGAAGGTTTCACGCCACACCCTGCTCAGGTG
TCCAGCTTATTCTTTGGCTTTGCAAATCTCATCATTCACGACCTGTTCTGGAGCAATAATGGCCCCGAAGTAAAAACATGCGATGGATCCGAATCTAAAGAAGGAAGCGAAGGCGCCCCA
ACCGGTGGAACTTCGAATCAATGGCAGAACAAAACTTCGTCCTATGCCTCTTTAGATCCTTTGTACGGGACCAATGCAAAAGAACAATGGCAGATTCGTGATAAAAGCCAACTCGGCCGT
GGTTTATTACACAATGATACATTTTCATCGAACCGATTACTTCTGATGCCACCTTCATCTTCTGCTTTACTCGTACTATTTTCAAGAAATCATAATCGTGCGGCTAGAAAAGTTCTAGAG
CTCAATGAGCGCGGGGCGTGGCAAAGCGACTTGAGTCAACTTACTCCAGAGCAATTGCAACAACAAGATGATGAGATCTTTGGTACCGCGCGACATATCAATTGTGCCTACTACGCGGGA
ATCATCCTCAGTGACTATTTACAAGCTATCTTAAATACTACTCAGGTTGACTCGAACTGGGCTTTAGATCCTAGAGCTCCGATAAAAAATCTTCTTGGTAGTACTCCAAAGGCTACTGGA
AATTCAGTTAGTGTAGAGTTCAATGTTCTTTATCGATGGCATTCCGCAGTTTCCTGGTCGCAGACGCAATGGATGGAAGACAAATTTTCTAAAGCTCTGCCTAGCAGAAATTGGGATGAG
ATGACCGGAGCGCATTTGGCAAAAGCATCTGCTCTCTTGCAAAAAGAGCTGAATGCCGAGGCAGGATCAGATCCTAGAAATTGGAAGTTATCCAAATATGAAACCAGTGTCCCTGAAGAG
GGACCACCGGAGTTAACATCAGAAGGAGTGTATGAAAGGGATGCCGAAAGTGGCAAATTTCGAGATGAGGATATAGCCAGAATCCTAAGAGATTCGACTAACGAAGTGGCTGGTACGTTT
GGAGCTCGACATGTACCAGCAGCAATGAAATGGATTGAATGTCAGGGAATGCGAACAGCGAGAGATGTTTGGAAATTGTGTACATTGAACGAATTCAGAGAGTTCATTGGTTTGAAAAAA
CACGATACCTTTGAACAATGGAACTCTGATCCATCGGTTGCTTCAGCAATGGCAGATCTCGTTGGACATCCAGCAAATATTCCACTTCATGTTGGTCTGAATGGTGAAGAATCTAAGAAA
CCGACAGTAGGTTCAGGTGTATGTCTACCTTACACAATCAGTCGAGCTATCCTGAGTGACGCCAGTAAGCATTCGTTGAGTGTTTCCAATCCAAATGAGGTGGTTTCTGATGATTCATTA
TTGCGCTACAAAGTTTCGTTGGTCCGAGGCGACAGATTCTTCACAGATTCTGCGAGTGCAGATGTGATGACTGATTGGGGCCTTAACGAGGTACAACCTGATCCGCAAAACGACCGAATC
AATATGTTTACAACGATCTCGCACTACTCTGTAAACCGATTTTTATCACCTTTCTTGACTCTCCCTAGCGCTGATAACATAGACTTCTTCTCAGTTCCTTTTGTCGTTCCCAAACATTCA
TATTCGAATATGCAGCGCATAGGGTTTCAAAAAGCTCTCAATTATTCTTTGAACCCTCCCCCACCATCTAATGTCGGATTTGAGCAAGTCCAAAATGGCGGCAAAACGATGGTTTGCGAG
ATGTCAGATACATCTGAAGTTGAAGTTCAAAGGATGGGCTTGATCTTTGGATTGGCGAGTCTCTTTGCTAATTTGTTGGACTCAAGTGTGTTGTGGTGA

Retrieve as FASTA