RedOxiBase: View Perox 10713

Entry information : RgraCcP02

Entry ID	10713
Creation	2012-03-07 (Christophe Dunand)
Last sequence changes	2012-03-07 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2013-08-20 (Catherine Mathe (Scipio))

Peroxidase information: RgraCcP02

Name

RgraCcP02

Class

Cytochrome C peroxidase [Orthogroup: CcP001]

Taxonomy

Eukaryota Fungi Basidiomycota Rhodotorula

Organism

Rhodotorula graminis [TaxId: 29898 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	RgraCcP02 start..stop	S start..stop
SrosCcP001	510	0	1..356	1..366
MvioCcP02	441	5e-156	1..353	1..339
CqueCcP02	422	2e-148	32..356	43..372
AteCcP02_NIH2624	420	1e-147	6..354	12..361

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1266044..1266350	307	N° 2	1266415..1266483	69	N° 3	1266550..1266689	140	N° 4	1266765..1266945	181
N° 5	1267015..1267095	81	N° 6	1267163..1267238	76	N° 7	1267310..1267453	144	N° 8	1267532..1267619	88
join(1266044..1266350,1266415..1266483,1266550..1266689,1266765..1266945,1267015 ..1267095,1267163..1267238,1267310..1267453,1267532..1267619)

Literature and cross-references RgraCcP02

DNA ref.	JGI genome: scaffold_2 (1266044..1267619)
Cluster/Prediction ref.	JGI gene: 48023

Protein sequence: RgraCcP02

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	361
PWM (Da):	39645.57
PI (pH):	7.6

Sequence 403
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSFSSLLRATPRLAARAAPLQAARQSARRSYASAAPAPKAGGNGGLLFGLLGVGVVGGGLYLYARPDSDDARTVKDAASTKEVDYQKVYNAIAESLEDEKYDDGSYGPVLVRLAWHCSGTYDKNTGNGGSNGATMRFAPEANHGANAGLEHARNHLEKIKQKFPEITYSDLWTLAGVCAIQEAGGPYIPWRAGRKDGDVDNCTPDGRLPDGDKGADHIRNIFYRMGMDDKEIVALSGAHALGRCHADRSGFDGPWQYSPTTFSNEYYRLLYDDKWQERKWQGPPQFENKSDKSLMMLRTDMALTTDKEFRKYSQKYAKDEQAFFSDFSKAFSKLIHLGVPTTQLSEAVPLKKTEDQAPATA*

Retrieve as FASTA

Remarks

Complete sequence from genomic (8 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCCTTCTCGTCCCTCCTCCGCGCGACCCCTCGCCTCGCCGCCCGTGCGGCCCCGCTCCAGGCTGCTCGCCAGTCGGCTCGTCGCTCGTACGCCTCGGCGGCACCTGCGCCCAAGGCC
GGCGGCAACGGCGGCCTCCTGTTCGGCCTCCTCGGCGTCGGCGTCGTCGGTGGCGGGCTCTACTTGTACGCTCGCCCGGACTCGGACGACGCCCGCACGGTCAAGGACGCCGCCAGCACC
AAGGAGGTCGACTACCAGAAGGTGTACAACGCGATCGCCGAGTCGCTCGAGGACGAGAAGTATGACGGTGCGTCCCCCTTCTTCCTCCTCCTCCAGTCGAGGTCGCCCGACTGATTCGCT
CTCGCCTGCAGACGGCTCGTACGGCCCTGTCCTCGTTCGTCTCGCGTGGCACTGCTCGGGCACCTACGACAAGAACACGGGTGCGCTCAGCGTCCTCTTTCTCTCCCTCTCGAGTGATCG
CCCTGACTCTCCTCCCGGCGCAACAGGCAACGGCGGCTCGAACGGCGCGACGATGCGCTTCGCCCCCGAGGCCAACCACGGCGCCAACGCCGGTCTCGAGCATGCCCGCAACCACCTCGA
GAAGATCAAGCAGAAGTTCCCCGAGATCACGTACTCGGACCTCTGGGTGCGCTCTCGCTCTCTCTCCCCTCGATCGTCGCCCACATCGAGGCTCCAGTCACTGACTCTGTGTCGCACACA
GACTCTCGCCGGCGTATGCGCCATCCAGGAGGCCGGCGGTCCTTACATCCCGTGGCGCGCCGGTCGCAAGGACGGCGACGTCGACAACTGCACGCCCGACGGCCGCCTTCCCGACGGCGA
CAAGGGCGCCGACCACATCCGCAACATCTTCTACCGCATGGGCATGGACGACAAGGAGATTGGTCCATCCCGCCTCCTCGCAGCCCTCCCTGGAAGACCTCGTTCCTGACTTGTCTCTGC
CCCCCTCACAGTCGCTCTCTCGGGCGCACACGCTCTCGGCCGGTGCCACGCCGACCGCTCGGGCTTCGACGGCCCGTGGCAGTACTCGCCGAGTGCGTCCCGCAGTTCCTCTCCTCCTGG
CGCCCGACTCGAGAGCCTGACCCGCACCCTCTCCCGCAGCGACGTTCTCGAACGAGTACTACCGTCTCCTGTACGACGACAAGTGGCAGGAGCGCAAGTGGCAGGGCCCTCCTCAGTGCG
TCATCATGTCCCTGCCTCCCTCAGCTCGAACGAGCCCCTCCTGACGACGAGATTCGCCTCGCGCAGGTTCGAGAACAAGTCGGACAAGAGCCTCATGATGCTCCGCACCGACATGGCGCT
CACGACCGACAAGGAGTTCCGCAAGTACTCGCAGAAGTACGCCAAGGACGAGCAGGCCTTCTTCAGCGACTTCTCGAAGGCGTTCTCCAAGTGCGTCCCTCTCGCGACCTCCTCTTCTGG
CCTCTCGCCGACCGCGCCCTGACTCGATTTCGCTTCTCCTCCCCACAGGCTCATCCACCTTGGCGTCCCGACGACCCAGCTCTCCGAGGCGGTCCCGCTCAAGAAGACGGAGGACCAGGC
GCCCGCGACGGCATGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA