Entry information : ScomLDS01
Entry ID 10727
Creation 2012-03-08 (Christophe Dunand)
Last sequence changes 2012-04-05 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-02-10 (Christophe Dunand)
Peroxidase information: ScomLDS01
Name ScomLDS01
Class Linoleate diol synthase (PGHS like)    [Orthogroup: LDS001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Schizophyllaceae Schizophyllum
Organism Schizophyllum commune    [TaxId: 5334 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value ScomLDS01
start..stop
S start..stop
JargLDS01 1030 0 3..1109 5..1067
LbiLDS01 968 0 3..1109 6..1070
CcinLDS01 917 0 2..1109 3..1086
AbLDS01_burnettii 916 0 2..1108 6..1081
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 415610..415888 279 N° 2 415928..416021 94 N° 3 416087..416242 156 N° 4 416295..416488 194
N° 5 416544..416621 78 N° 6 416683..416799 117 N° 7 416957..417110 154 N° 8 417170..417304 135
N° 9 417360..417457 98 N° 10 417543..417739 197 N° 11 417796..417889 94 N° 12 417959..418084 126
N° 13 418141..418279 139 N° 14 418330..418383 54 N° 15 418438..418585 148 N° 16 418641..418797 157
N° 17 418848..419024 177 N° 18 419073..419158 86 N° 19 419210..419345 136 N° 20 419396..419696 301
N° 21 419747..419865 119 N° 22 419916..420001 86 N° 23 420053..420160 108 N° 24 420216..420306 91
N° 25 420359..420370 12  
join(415610..415888,415928..416021,416087..416242,416295..416488,416544..416621, 416683..416799,416957..417110,417170..417304,417360..417457,417543..417739,41779 6..417889,417959..418084,418141..418279,418330..418383,418438..418585,418641..41 8797,418848..419024,419073..419158,419210..419345,419396..419696,419747..419865, 419916..420001,420053..420160,420216..420306,420359..420370)


exon

Literature and cross-references ScomLDS01
DNA ref. JGI genome:   scaffold_19 (415610..420370)
EST ref. GenBank:   GW386594.1 [3' end]   GW386593.1 [Fragment]
Cluster/Prediction ref. JGI gene:   1177102
Protein sequence: ScomLDS01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   1111
PWM (Da):   %s   123209.55  
PI (pH):   %s   6.34
Sequence 1152
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSIIQRLAGGADFVLASTAPVDTDGGKPRPRYVVGQKLDELVQYLKNPPAQLDSLVSISIPYILDAKLTKCSEPAYLDAVKHMHSGLDDRKLLPAQLEHLLTLMARLGSGNDFSSRVQEAVIDLLYKDLPHPPACYLSVLHQAGLNLNVPLANVNYAYRTADGSYYNPLFPTLGMAGTPYARSVPSANCTPLNNLPDAGLVFDTLLRRKEGTFKEHEGGMSSLFFAMADLIIHCIFDTDHKDITKNNTSSYLDLSILYGNSEEQLNGVRRHDGTGRLWDDVFADRRLLLMPPSTCALLVLFCRNHNHIAQRILDINEKGKYRSVDSFSDDARKAQDDEIFHRARLVNCGFFMQVILADYVGAILGLVRDGLPWRLDPLMTMRRESHEFSPQGEGNVVSIEFNLLYRWHAALSAQDTKWTEGLFKSVFGQDVDFDKVTPTDFKRVVGRMFGQPQDPRTATFTDYAGQRLERHPEEGAATPDGAGRFADADLARVLQDATSWRAGSYGARAIPAALRVIEVMGIEQSREWGTCSLNEFRHFMGLKKYDSFKDWNPDPVVHKQAETLYKDINNLELHVGMQAEAIKTPGPGAGLCPGYTISRAILGDAVALTRGDRFLTTEYTPNNLTRWGFKYSHVDPDDGSVGGILPRMLLATLPDHYPSGSAYTHFPFLEPAYIRNEMRKRGDKNLDRYTWDRPAVPAPLTVISTWAEAVEVLDTQKARFVSSYPQRLKDVTGVDADSKLLARKTLLRLAPRLPAYFASKTMELINASPVTYVDADTKTVDIGRHVINLLPVHWISQQLACIALKTESNPLGTEYESDVCDMFENVCRYVYLDNDTYNHFRLQTDARKAFEHLTSFTARKLRAMTGSRISVSGITQTLSRFILKEDDSTPFLRALLEGSDGADADTLAAHLFAEVVPTAAHFSRIVMQVVDFFLGSDEEGDEKRQAREAIVALASQCTAEADKQVMKYVDEALRLEPAVSGVYRTASAAAVVGNQRIEAGQRVYVALSAAKQDSSVFGADTSTADFKRSTPSSTRLGLPDSGLLIPQLFDRILPRVLGVIFGLKNLRRAPGQSGVMSSFTQTLHGAPEKLFFDFDGNVTPIPESLFVEYDF

Retrieve as FASTA  
Remarks Complete sequence from genomic (24 introns) and 2 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGTCCATCATTCAGCGCCTCGCTGGCGGCGCCGACTTCGTGCTCGCGAGCACGGCGCCCGTCGACACCGACGGTGGAAAGCCACGACCGCGTTATGTCGTCGGTCAGAAGCTCGATGAGC
TCGTTCAGTACCTGAAGAACCCGCCCGCGCAACTCGACAGTCTGGTGAGCATCAGCATCCCCTACATTCTGGACGCAAAACTGACGAAATGCTCCGAGCCCGCTTACCTCGACGCGGTCA
AGCACATGCATTCTGGCCTTGACGATCGCAAGCTGTTG
GTGAGCAACACGTCTACTTACGATGCGCTCCTCGCTTAGCCTGCGCAGTTGGAGCACTTGCTCACCCTCATGGCGCGCCTCG
GCAGCGGCAATGACTTTTCGAGCAGGGTCCAAGAGGCGGTCATTGATTTAC
GTGAGTAAATAACCGCATATATGCGCCTCAAATCCCCGCTAGTACGACTGCTGACCGTTTTCCAGTCTA
CAAGGACCTGCCCCACCCTCCGGCATGCTACCTCTCCGTGCTACACCAAGCGGGCCTCAATCTCAACGTCCCGCTCGCGAACGTCAATTACGCCTATCGCACCGCGGACGGATCCTACTA
CAACCCTCTCTTTCCTACCCTAGGCATGGCTG
GTACGCGTGTCCGCCCTTTGGAAATGGCTGCAAAAGCTGACTGAGAATTTAGGTACACCATACGCCCGATCGGTGCCCTCAGCGAACT
GTACTCCTCTCAATAATCTACCTGACGCCGGCCTTGTGTTCGATACACTACTTCGACGCAAGGAAGGCACTTTCAAGGAGCACGAAGGCGGGATGTCAAGCCTTTTCTTCGCTATGGCCG
ACCTAATAATTCATTGTATATTCGATACCGACCATAAG
GTGCGTGCAGAATTCTCGTGTATACTGCTGAAACCTTGCGCTGACCCCAGCCCAGGATATAACGAAGAACAACACGAGCAGC
TACCTGGACCTGAGTATCCTCTATGGTAATTCGGAAGAGCAATTGAACGGC
GTACGTAGGCAATTGCCTTGCCGCTTCCAATATGTATGCGCATACTGAAGAATGGTCGCAGGTCCGCCG
CCACGATGGCACTGGGCGCCTCTGGGACGACGTATTCGCAGACCGCAGACTGCTCCTCATGCCACCGAGCACGTGCGCGCTGCTCGTGCTCTTTTGTCGCAATCATAAT
GTGAGTGGACT
GGTTCGCATGATGTGCCCATACAAGCGCGCATATAAGGTGTTTTTTCGCGTGCATAGCCTGGCTATATGCAGTGAGATTGACCATCGACCATATATGCGTCGAGGTAATCGTCTGTATAT
GCGTCGAAACTAATCGTCTTTCGCAGCACATCGCCCAGCGCATCCTCGATATCAACGAGAAGGGCAAGTACCGCTCCGTCGACAGCTTCAGCGACGATGCTCGCAAGGCGCAGGACGATG
AGATCTTCCACCGGGCGCGATTGGTGAATTGCGGGTTCTTTATGCAGGTCATCTTGGCTG
GTGCGTATATCTATCTTTTCGTTACACAATGCCGCCTCATTCGTACGCTGGATGCGCAGA
CTACGTCGGCGCAATCCTCGGCCTCGTCCGCGACGGGCTACCGTGGCGGCTGGATCCCCTCATGACGATGCGGAGGGAGAGCCACGAGTTCTCGCCGCAGGGAGAGGGCAATGTGGTGTC
GATTGAGTTCAATT
GTGAGTCCTATTGCGGCGCTTGTTTTGAATACATCTTGAGTGTATGCCTGCCTAGTGTTGTACCGATGGCACGCCGCCCTCTCTGCTCAGGACACCAAGTGGACCG
AGGGTCTTTTCAAGAGCGTGTTCGGTCAGGACGTTGACTTTGATAAG
GTGAGCCTCTCGACCCTTTGTAGCGACTGTGCCCATGTTACTCCAACTTGTGCCCGTCATGCTCATTGTTCGA
TCCTTTTACCAGGTCACTCCCACTGACTTCAAGCGCGTCGTCGGACGCATGTTCGGCCAGCCGCAAGACCCGCGCACGGCGACGTTCACTGACTACGCCGGTCAGCGGCTCGAGAGGCAT
CCGGAAGAGGGGGCCGCCACTCCAGATGGTGCCGGCCGTTTTGCGGACGCGGATCTGGCGCGGGTGTTGCAGGACGCAACGAGTTGGCG
GTGAGCCATTGACAGTCCCATCGACAGTGCG
AAAGGCAGGCTGACGTGCTTTGTAGAGCCGGCTCGTACGGTGCTCGCGCTATTCCCGCTGCGCTCCGTGTGATCGAGGTGATGGGTATCGAGCAAAGTAGGGAGTGGGGGACGTGTTCGG
TACGTGGTCGTCGTGCATCTTCCGGCTGGAATTGCATCGTCGACTGGTGCTGACGCAGTGTCTTCCAGCTCAACGAGTTTCGCCACTTCATGGGCTTGAAGAAGTACGACAGCTTCAAGG
ACTGGAATCCGGATCCTGTCGTTCACAAGCAAGCCGAGACGTTGTACAAGGACATCAACAACCTTGAGCTACAC
GTAAGCTATCTTCCACATGTCCAGACGTATTGACATGACTGACTTC
GCTTGACCAGGTCGGCATGCAGGCAGAAGCCATCAAGACGCCAGGTCCAGGAGCAGGCCTTTGTCCGGGATACACAATTTCGCGTGCGATTTTGGGCGATGCCGTTGCGCTGACGCGAGG
CGATAGGTTCTTGACAACTGAGTATACTC
GTGAGTGGCTACTTCGATCCCTCGAATCTGTCTGACGCAGCGCTTTGTAGCGAACAATCTGACGCGCTGGGGGTTCAAGTACAGCCATGTC
GATCCGGACGATG
GTAAGGGGTGACCAGATCACCGTCAGTGGGAATATAACTGACGAAGTCGTCAAGGCTCTGTCGGTGGCATCCTTCCGCGCATGCTGCTCGCAACGTTGCCGGACCAC
TATCCCTCGGGAAGCGCATACACCCACTTCCCGTTCCTCGAACCCGCCTACATCCGGAACGAGATGCGCAAGCGAGGAGACAAGAACTTAGACAG
GTGCACCTTGATTGGCGGAGGCGGG
TCGGTCACAGCTAATCGCCGTTTCCCCTAGATATACATGGGATCGCCCTGCCGTCCCTGCGCCCTTGACTGTCATATCGACCTGGGCTGAGGCAGTGGAGGTGCTGGACACGCAGAAGGC
CCGCTTCGTGTCGTCGTACCCGCAGCGACTGAAGGACGTCACGGGTGTGGATGCGGACTCAAAGCTG
GTAGGCTTCATTGGTCTACGGTACTGGGTCCAAAGCTGACGCTCGAGCAGCTC
GCAAGGAAGACCTTGCTGCGGCTCGCGCCACGTTTGCCGGCATACTTCGCGTCCAAGACCATGGAGTTGATCAATGCGAGTCCGGTAACATATGTCGATGCGGATACGAAGACGGTCGAT
ATTGGGCGCCATGTTATCAACTTGCTACCGGTGCATTGGATATCGCAGCAGCTC
GTGGGTTGCATCTTGCTCGGTAAATTTCGCGTACTAACCATGCTTCAGGCTTGCATTGCGCTCAAG
ACGGAGAGCAACCCATTGGGTACGGAGTACGAGAGCGACGTGTGCGACATGTTCGAGAATGTGTGCAG
GTCAGGCGTCGCCTTTTCAAAGTTGGACGAACTTCAACTGACTCCGCATAGA
TACGTCTACCTCGACAACGACACCTACAACCACTTCCGGCTGCAGACGGACGCCAGGAAAGCGTTCGAGCATCTCACGTCGTTCACCGCCCGCAAACTGCGCGCGATGACTGGCTCGAGA
ATATCCGTGTCAGGC
GTGCGTCCGATGCTGCCTTGTTTCTTCTCTTTACTAACCCCGTCGCGTAGATCACTCAAACCCTGTCGCGTTTCATACTCAAGGAAGACGATAGCACGCCTTTCC
TCCGTGCTCTTCTTGAAGGCAGCGATGGCGCCGACGCTGATACCCTTGCGGCACACCTCTTCGCGGAGGTCGTCCCTACGGCGGCGCACTTCTCGCGCATCGTCATGCAGGTCGTGGACT
TCTTCCTGGGCAGCGACGAGGAGGGCGACGAGAAGAGGCAGGCGAGAGAGGCTATCGTGGCGTTGGCGTCGCAGTGCACGGCGGAGGCGGACAAGCAGGTTATGAAGTATGTGGATGAGG
CGCTGC
GTGAGTGTGCATGTTCGTCGTTGGGTGTGGGTGGCTGACTTGCCTTTCAGGCCTTGAACCGGCGGTATCGGGCGTATACAGAACTGCATCTGCTGCTGCAGTCGTCGGGAACCA
GCGCATTGAGGCGGGTCAGCGCGTGTATGTAGCACTGTCGGCGGCGAAGCAGGAT
GTGAGTGACTTTGTCCTGCGGCTTACGAACTGCTGCTGATCCTGCCCTAGTCATCGGTCTTCGGC
GCAGACACAAGCACTGCTGACTTCAAGAGGAGTACGCCATCGTCGACCCGTCTTGGGCTGCCGGACTCCGG
GTGAGTTATGCGCTGCTATCTGTGAAGAGCTCGACTGAGTTTTTGCCGT
AGCTTGCTGATACCACAGTTATTCGACCGAATATTGCCGCGTGTGCTCGGGGTGATCTTTGGGTTGAAGAACCTTCGTCGCGCGCCTGGGCAGTCGGGAGTGATGAGCAGGTGTGTTGAT
ATGTTAGGTGAAGGCCACAGCGGAAGCTAAGACTTAACCTCGCAGCTTCACGCAGACGCTGCACGGTGCGCCCGAGAAGCTGTTCTTTGACTTCGATGGGAACGTTACGCCAATCCCAGA
GTCACTCTTCGTCGAG
GTGAGAGCGCCGTATCCAGCGGCTTGCTGCGCACACTGACGCACACCTGAAGTACGACTTTTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGTCCATCATTCAGCGCCTCGCTGGCGGCGCCGACTTCGTGCTCGCGAGCACGGCGCCCGTCGACACCGACGGTGGAAAGCCACGACCGCGTTATGTCGTCGGTCAGAAGCTCGATGAGC
TCGTTCAGTACCTGAAGAACCCGCCCGCGCAACTCGACAGTCTGGTGAGCATCAGCATCCCCTACATTCTGGACGCAAAACTGACGAAATGCTCCGAGCCCGCTTACCTCGACGCGGTCA
AGCACATGCATTCTGGCCTTGACGATCGCAAGCTGTTG
CCTGCGCAGTTGGAGCACTTGCTCACCCTCATGGCGCGCCTCGGCAGCGGCAATGACTTTTCGAGCAGGGTCCAAGAGGCGG
TCATTGATTTAC
TCTACAAGGACCTGCCCCACCCTCCGGCATGCTACCTCTCCGTGCTACACCAAGCGGGCCTCAATCTCAACGTCCCGCTCGCGAACGTCAATTACGCCTATCGCACCG
CGGACGGATCCTACTACAACCCTCTCTTTCCTACCCTAGGCATGGCTG
GTACACCATACGCCCGATCGGTGCCCTCAGCGAACTGTACTCCTCTCAATAATCTACCTGACGCCGGCCTTG
TGTTCGATACACTACTTCGACGCAAGGAAGGCACTTTCAAGGAGCACGAAGGCGGGATGTCAAGCCTTTTCTTCGCTATGGCCGACCTAATAATTCATTGTATATTCGATACCGACCATA
AG
GATATAACGAAGAACAACACGAGCAGCTACCTGGACCTGAGTATCCTCTATGGTAATTCGGAAGAGCAATTGAACGGCGTCCGCCGCCACGATGGCACTGGGCGCCTCTGGGACGACG
TATTCGCAGACCGCAGACTGCTCCTCATGCCACCGAGCACGTGCGCGCTGCTCGTGCTCTTTTGTCGCAATCATAAT
CACATCGCCCAGCGCATCCTCGATATCAACGAGAAGGGCAAGT
ACCGCTCCGTCGACAGCTTCAGCGACGATGCTCGCAAGGCGCAGGACGATGAGATCTTCCACCGGGCGCGATTGGTGAATTGCGGGTTCTTTATGCAGGTCATCTTGGCTG
ACTACGTCG
GCGCAATCCTCGGCCTCGTCCGCGACGGGCTACCGTGGCGGCTGGATCCCCTCATGACGATGCGGAGGGAGAGCCACGAGTTCTCGCCGCAGGGAGAGGGCAATGTGGTGTCGATTGAGT
TCAATT
TGTTGTACCGATGGCACGCCGCCCTCTCTGCTCAGGACACCAAGTGGACCGAGGGTCTTTTCAAGAGCGTGTTCGGTCAGGACGTTGACTTTGATAAGGTCACTCCCACTGACT
TCAAGCGCGTCGTCGGACGCATGTTCGGCCAGCCGCAAGACCCGCGCACGGCGACGTTCACTGACTACGCCGGTCAGCGGCTCGAGAGGCATCCGGAAGAGGGGGCCGCCACTCCAGATG
GTGCCGGCCGTTTTGCGGACGCGGATCTGGCGCGGGTGTTGCAGGACGCAACGAGTTGGCG
AGCCGGCTCGTACGGTGCTCGCGCTATTCCCGCTGCGCTCCGTGTGATCGAGGTGATGG
GTATCGAGCAAAGTAGGGAGTGGGGGACGTGTTCG
CTCAACGAGTTTCGCCACTTCATGGGCTTGAAGAAGTACGACAGCTTCAAGGACTGGAATCCGGATCCTGTCGTTCACAAGCAAG
CCGAGACGTTGTACAAGGACATCAACAACCTTGAGCTACAC
GTCGGCATGCAGGCAGAAGCCATCAAGACGCCAGGTCCAGGAGCAGGCCTTTGTCCGGGATACACAATTTCGCGTGCGA
TTTTGGGCGATGCCGTTGCGCTGACGCGAGGCGATAGGTTCTTGACAACTGAGTATACTC
CGAACAATCTGACGCGCTGGGGGTTCAAGTACAGCCATGTCGATCCGGACGATGGCTCTG
TCGGTGGCATCCTTCCGCGCATGCTGCTCGCAACGTTGCCGGACCACTATCCCTCGGGAAGCGCATACACCCACTTCCCGTTCCTCGAACCCGCCTACATCCGGAACGAGATGCGCAAGC
GAGGAGACAAGAACTTAGACAG
ATATACATGGGATCGCCCTGCCGTCCCTGCGCCCTTGACTGTCATATCGACCTGGGCTGAGGCAGTGGAGGTGCTGGACACGCAGAAGGCCCGCTTCG
TGTCGTCGTACCCGCAGCGACTGAAGGACGTCACGGGTGTGGATGCGGACTCAAAGCTG
CTCGCAAGGAAGACCTTGCTGCGGCTCGCGCCACGTTTGCCGGCATACTTCGCGTCCAAGA
CCATGGAGTTGATCAATGCGAGTCCGGTAACATATGTCGATGCGGATACGAAGACGGTCGATATTGGGCGCCATGTTATCAACTTGCTACCGGTGCATTGGATATCGCAGCAGCTC
GCTT
GCATTGCGCTCAAGACGGAGAGCAACCCATTGGGTACGGAGTACGAGAGCGACGTGTGCGACATGTTCGAGAATGTGTGCAG
ATACGTCTACCTCGACAACGACACCTACAACCACTTCC
GGCTGCAGACGGACGCCAGGAAAGCGTTCGAGCATCTCACGTCGTTCACCGCCCGCAAACTGCGCGCGATGACTGGCTCGAGAATATCCGTGTCAGGC
ATCACTCAAACCCTGTCGCGTT
TCATACTCAAGGAAGACGATAGCACGCCTTTCCTCCGTGCTCTTCTTGAAGGCAGCGATGGCGCCGACGCTGATACCCTTGCGGCACACCTCTTCGCGGAGGTCGTCCCTACGGCGGCGC
ACTTCTCGCGCATCGTCATGCAGGTCGTGGACTTCTTCCTGGGCAGCGACGAGGAGGGCGACGAGAAGAGGCAGGCGAGAGAGGCTATCGTGGCGTTGGCGTCGCAGTGCACGGCGGAGG
CGGACAAGCAGGTTATGAAGTATGTGGATGAGGCGCTGC
GCCTTGAACCGGCGGTATCGGGCGTATACAGAACTGCATCTGCTGCTGCAGTCGTCGGGAACCAGCGCATTGAGGCGGGTC
AGCGCGTGTATGTAGCACTGTCGGCGGCGAAGCAGGAT
TCATCGGTCTTCGGCGCAGACACAAGCACTGCTGACTTCAAGAGGAGTACGCCATCGTCGACCCGTCTTGGGCTGCCGGACT
CCGG
CTTGCTGATACCACAGTTATTCGACCGAATATTGCCGCGTGTGCTCGGGGTGATCTTTGGGTTGAAGAACCTTCGTCGCGCGCCTGGGCAGTCGGGAGTGATGAGCAGCTTCACGC
AGACGCTGCACGGTGCGCCCGAGAAGCTGTTCTTTGACTTCGATGGGAACGTTACGCCAATCCCAGAGTCACTCTTCGTCGAG
TACGACTTTTGA

Retrieve as FASTA