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Entry information : PcarMnP04
Entry ID 10797
Creation 2012-03-29 (Christophe Dunand)
Last sequence changes 2012-03-29 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-04-06 (Catherine Mathe (Scipio))
Peroxidase information: PcarMnP04
Name PcarMnP04
Class Manganese peroxidase    [Orthogroup: MnP001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Corticiaceae Phanerochaete
Organism Phanerochaete carnosa    [TaxId: 231932 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PcarMnP04
start..stop		 S start..stop
PsoMnP02 607 0 1..377 1..377
CsuMnP04 606 0 1..377 1..377
PgigMnP04 606 0 1..381 1..392
CsuMnP05 602 0 1..377 1..377
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '10797' 'join(3176169..3176288,3176347..3176398,3176454..3176480,3176539..3176578,3176633..3176807,3176862..3177083,3177134..3177548,3177611..3177705)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3176169..3176288 118 N° 2 3176347..3176398 50 N° 3 3176454..3176480 25 N° 4 3176539..3176578 38
N° 5 3176633..3176807 173 N° 6 3176862..3177083 220 N° 7 3177134..3177548 413 N° 8 3177611..3177705 93
join(3176169..3176288,3176347..3176398,3176454..3176480,3176539..3176578,3176633 ..3176807,3176862..3177083,3177134..3177548,3177611..3177705)


exon

Literature and cross-references PcarMnP04
DNA ref. JGI genome:   scaffold_5 (3176169..3177705)
Cluster/Prediction ref. JGI gene:   144982
Protein sequence: PcarMnP04
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   381 (363)
PWM (Da):   %s   39629.56 (37733.5)  
PI (pH):   %s   4.28 (4.23) Peptide Signal:   %s   cut: 19 range:19-381
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFRSLLALVALAAVSNAAPTTVCPDGTHVSNAACCPFIPLIDDLQNTLFQGECGEDAHEAIRLTFHDAIAISQSQGPKAGGGADGSMLIFPTVEPGFHANAGISDSVNNLIPFLSTHNV
SAGDLVQFAGAVALSNCPGAPRVQFLAGRPNATAPAVDGLIPEPQDGVSQILERFADAGNFSPFEVIALLASHSIARADKVDTSIDAAPFDSTPFVFDTQVYLEVLLKGVGFPGNGSQVG
EVPSPLPAHSGNDTGEMRLQSDFALARDPRTACFWQGFVNEQDFMVSSFQAAFAKLAVLGHNPSKLIDCSEVVPTPKPAVNKPATFPATTGPQDLQLSCPTQKFPTLSVDPGAQETLIPH
CPDGGQDCPSVQFSGPAPDIP*

Retrieve as FASTA  
Remarks Complete sequence from genomic (7 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCCGATCGCTCCTTGCCCTTGTGGCTCTCGCCGCTGTTTCCAACGCTGCACCGACCACGGTGTGCCCCGACGGCACCCATGTCAGCAACGCAGCTTGCTGCCCCTTCATTCCG
CGGTACGGAGTACTTAGTGACCATTGCCAGCTTGATTCTGACAGTGCATATACTTCGCAGCTTATCGACGACCTGCAGAACACCCTGTTCCAGGGCGAATGCGGTGAAGACGCGGTAGGT
GTCCGTCCGCTGACTCCAGCTGGACTTGCGCTGACTCTCTTTCTCGCAGCGCACGAGGCTATCCGACTGACTTTCCCCGTACGCATTATTCAAATGGTTTGCCGCTACCTGACTCGTGCT
GACCACAAACCCCCAGACGACGCCATTGCTATCTCTCAGAGCCAGGGCCCGAAAGCGCGTGAGTTGCATTTCACATTTGAGACAGCATATCATCTAACGAAGACATTACCAGTGGCGGAG
GTGCCGATGGCTCCATGCTCATCTTCCCCACCGTCGAACCAGGCTTCCACGCCAACGCCGGTATCAGCGACAGCGTTAATAACCTCATTCCCTTCCTTTCTACGCACAATGTCAGTGCCG
GTGACCTCGTCCAGTTTGCCGGCGCCGTTGCGCTGAGTAACTGCCCCCCGTAAGTGTTCAGACGGGCTTCATTTTGGATGCAGGTTGGCTCATCCGCTACTAGGGTGCCCCCCGCGTTCA
GTTCCTCGCCGGTCGCCCGAACGCGACTGCCCCCGCCGTCGACGGCCTGATCCCCGAGCCTCAGGACGGCGTCAGCCAGATTCTCGAGCGGTTCGCCGACGCGGGCAACTTCAGTCCCTT
TGAGGTTATCGCGCTCCTGGCCTCACACTCCATCGCACGCGCTGACAAGGTTGACACGTCCATCGACGCCGCACCCTTCGACTCCCCGTAAGTGACAATGCTTCCTATCCCAACATCACG
CTAACCAGTACTTGCAGACCCCATTCGTATTCGACACCCAGGTCTACCTCGAGGTCTTGCTCAAGGGTGTGGGCTTCCCCGGAAACGGCAGCCAAGTCGGTGAGGTCCCGTCCCCGCTTC
CCGCGCACAGCGGCAACGACACCGGCGAGATGCGTCTCCAGTCCGACTTTGCGCTCGCACGCGACCCGCGCACGGCCTGCTTCTGGCAGGGCTTCGTGAACGAGCAGGACTTCATGGTGT
CGAGCTTCCAGGCCGCGTTTGCCAAGCTCGCCGTCCTCGGCCACAACCCCAGCAAACTGATCGACTGCTCCGAGGTCGTGCCCACCCCGAAGCCGGCCGTCAACAAGCCCGCCACCTTCC
CCGCCACCACCGGCCCGCAGGACCTGCAGCTTTCGTGCCCCACCCAGAAGTTCCCGACCTTGTCTGTCGATCTCGTGAGTGCCCACAGCCTCCCATTTCTGCGTTGGACACTAACGCTCT
GTTCCCGCTGCCGCAGCCGGTGCACAGGAGACCCTTATCCCTCACTGCCCTGACGGTGGCCAGGACTGCCCCTCGGTCCAGTTCAGCGGCCCTGCGCCTGATATCCCTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCCGATCGCTCCTTGCCCTTGTGGCTCTCGCCGCTGTTTCCAACGCTGCACCGACCACGGTGTGCCCCGACGGCACCCATGTCAGCAACGCAGCTTGCTGCCCCTTCATTCCG
CTTATCGACGACCTGCAGAACACCCTGTTCCAGGGCGAATGCGGTGAAGACGCGCACGAGGCTATCCGACTGACTTTCCACGACGCCATTGCTATCTCTCAGAGCCAGGGCCCGAAAGCT
GGCGGAGGTGCCGATGGCTCCATGCTCATCTTCCCCACCGTCGAACCAGGCTTCCACGCCAACGCCGGTATCAGCGACAGCGTTAATAACCTCATTCCCTTCCTTTCTACGCACAATGTC
AGTGCCGGTGACCTCGTCCAGTTTGCCGGCGCCGTTGCGCTGAGTAACTGCCCCGGTGCCCCCCGCGTTCAGTTCCTCGCCGGTCGCCCGAACGCGACTGCCCCCGCCGTCGACGGCCTG
ATCCCCGAGCCTCAGGACGGCGTCAGCCAGATTCTCGAGCGGTTCGCCGACGCGGGCAACTTCAGTCCCTTTGAGGTTATCGCGCTCCTGGCCTCACACTCCATCGCACGCGCTGACAAG
GTTGACACGTCCATCGACGCCGCACCCTTCGACTCCACCCCATTCGTATTCGACACCCAGGTCTACCTCGAGGTCTTGCTCAAGGGTGTGGGCTTCCCCGGAAACGGCAGCCAAGTCGGT
GAGGTCCCGTCCCCGCTTCCCGCGCACAGCGGCAACGACACCGGCGAGATGCGTCTCCAGTCCGACTTTGCGCTCGCACGCGACCCGCGCACGGCCTGCTTCTGGCAGGGCTTCGTGAAC
GAGCAGGACTTCATGGTGTCGAGCTTCCAGGCCGCGTTTGCCAAGCTCGCCGTCCTCGGCCACAACCCCAGCAAACTGATCGACTGCTCCGAGGTCGTGCCCACCCCGAAGCCGGCCGTC
AACAAGCCCGCCACCTTCCCCGCCACCACCGGCCCGCAGGACCTGCAGCTTTCGTGCCCCACCCAGAAGTTCCCGACCTTGTCTGTCGATCCCGGTGCACAGGAGACCCTTATCCCTCAC
TGCCCTGACGGTGGCCAGGACTGCCCCTCGGTCCAGTTCAGCGGCCCTGCGCCTGATATCCCTTAA

Retrieve as FASTA