Sequence Properties
first value : protein
second value (mature protein)
|
Length (aa):  |
315 |
| PWM (Da): |
33566.68 |
|
| PI (pH):
| 8.21 |
|
Sequence 356
Send to BLAST
Send to Peroxiscan
|
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
MFSFITFLNSGSATLQVGFYRSTCPSAESVVRKAVNKAVAKNPGIGAGLIRMHFHDCFVRGCDASILLDSTPGNPSEKEHPANNPSLRGFEVIDEAKAELESLCPQKVSCADILAFAARDSAYKLGSINYAVPAGRRDGLVSLKDEPSQNLPPFFFNAQQLEANFASKGLSLDEMVTLSGAHSIGVSHCSSFSDRLYSFNATHTQDPSMDTKxxSQLKSKCPNNGGASDPTVPLDLVTPNRLDNKYYTNLKNHRGLLTSDQTLFNSPSTANIVRSNANNGGAWANKFAAAMVKMGSIDILTGSEGEIRRKCRVVN |
Retrieve as FASTA
|
|
| Remarks |
Complete sequence from NGS. Two XX in frame due to NNN in DNA. |
DNA ►
Send to BLAST
|
| .........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGTTCTCGTTCATCACCTTTCTGAACTCGGGTTCAGCAACTCTCCAAGTGGGATTCTACCGCTCCACTTGTCCGTCTGCGGAGTCCGTCGTCCGGAAAGCAGTGAACAAAGCGGTGGCC
AAGAACCCTGGCATCGGTGCTGGGCTTATTAGAATGCACTTCCATGATTGCTTTGTTCGGGTATGCAAGAACTTCTTTACACATTTCAGAAGTAGTGGTTATAATCTCGTTTGCGGAAAA
GTACAAAAGATATCGATGAGATGGGAGTGTGGGGAGTACATTTCACATTCTATCACTGGTCCAGGACTTTTTAAGTTTTGTCTAACCGACCGGTCACAAAATAATCTATATTTCTTNNNN
NNNNNNNNNNNNNNNNNNNNNNTAATTAATTGGCTGATCTTTGATCCAATAATAGGGTTGCGATGCTTCAATCTTGCTGGATTCGACCCCAGGCAACCCATCAGAGAAGGAACATCCCGC
AAACAACCCGAGCTTGCGAGGTTTTGAAGTCATCGATGAGGCGAAGGCTGAGCTAGAGTCTCTATGCCCGCAGAAGGTCTCATGCGCTGACATTCTTGCATTCGCAGCACGCGACAGTGC
CTACAAACTCGGCAGCATCAACTACGCAGTCCCAGCGGGTCGCCGCGATGGGCTGGTCTCACTCAAAGACGAGCCCTCCCAGAATCTTCCTCCTTTCTTCTTCAATGCGCAACAATTAGA
AGCTAATTTTGCGAGCAAAGGCCTCTCTCTGGACGAGATGGTGACGCTATCCGGTGCACATTCGATTGGAGTCTCGCATTGCTCCTCCTTCTCGGACCGCTTGTACTCCTTCAATGCCAC
TCACACCCAAGACCCTTCAATGGACACCAAGTTNNNTAGTCAACTGAAATCTAAGTGTCCGAACAATGGAGGCGCTAGCGATCCCACTGTGCCATTGGACTTGGTCACGCCGAACAGGCT
AGACAACAAGTACTACACTAATTTGAAGAACCACCGAGGCCTATTGACTTCTGATCAGACTCTTTTTAACAGCCCTTCAACGGCTAATATCGTGAGGAGCAATGCAAATAATGGCGGAGC
ATGGGCTAACAAGTTCGCGGCAGCAATGGTGAAGATGGGATCGATCGACATCCTCACTGGGAGTGAGGGTGAGATTAGGAGGAAATGCAGAGTGGTGAACTAG |
Retrieve as FASTA
|
|
CDS►
Send to BLAST
|
| .........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGTTCTCGTTCATCACCTTTCTGAACTCGGGTTCAGCAACTCTCCAAGTGGGATTCTACCGCTCCACTTGTCCGTCTGCGGAGTCCGTCGTCCGGAAAGCAGTGAACAAAGCGGTGGCC
AAGAACCCTGGCATCGGTGCTGGGCTTATTAGAATGCACTTCCATGATTGCTTTGTTCGGGGTTGCGATGCTTCAATCTTGCTGGATTCGACCCCAGGCAACCCATCAGAGAAGGAACAT
CCCGCAAACAACCCGAGCTTGCGAGGTTTTGAAGTCATCGATGAGGCGAAGGCTGAGCTAGAGTCTCTATGCCCGCAGAAGGTCTCATGCGCTGACATTCTTGCATTCGCAGCACGCGAC
AGTGCCTACAAACTCGGCAGCATCAACTACGCAGTCCCAGCGGGTCGCCGCGATGGGCTGGTCTCACTCAAAGACGAGCCCTCCCAGAATCTTCCTCCTTTCTTCTTCAATGCGCAACAA
TTAGAAGCTAATTTTGCGAGCAAAGGCCTCTCTCTGGACGAGATGGTGACGCTATCCGGTGCACATTCGATTGGAGTCTCGCATTGCTCCTCCTTCTCGGACCGCTTGTACTCCTTCAAT
GCCACTCACACCCAAGACCCTTCAATGGACACCAAGTTNNNTAGTCAACTGAAATCTAAGTGTCCGAACAATGGAGGCGCTAGCGATCCCACTGTGCCATTGGACTTGGTCACGCCGAAC
AGGCTAGACAACAAGTACTACACTAATTTGAAGAACCACCGAGGCCTATTGACTTCTGATCAGACTCTTTTTAACAGCCCTTCAACGGCTAATATCGTGAGGAGCAATGCAAATAATGGC
GGAGCATGGGCTAACAAGTTCGCGGCAGCAATGGTGAAGATGGGATCGATCGACATCCTCACTGGGAGTGAGGGTGAGATTAGGAGGAAATGCAGAGTGGTGAACTAG |
Retrieve as FASTA
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