Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
339 (314) |
PWM (Da): |
36569.1 (33781.6) |
Transmb domain: |
i42-64o (i17-39o) |
PI (pH):
| 8.54 (8.04) |
Peptide Signal:
| cut: 26 range:26-339 |
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Sequence 0
Send to BLAST
Send to Peroxiscan
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MASNTNRKIY FVFFVCAIAL RSALAQLSNQ DYYTQRCPRA SLFRFLAQFY PFSFMSSFVY VLHVLLRANF YFIPNPYKDY SSSTFIFDGS SHGCDASILL DDTVNFTGEK TAFPNVNSVR
GFDVIDTIKL KVEKLCPGVV SCADILAVAA RDSVVILDGP SWQVQLGRRD STTASLNDAN IDLPAPTLNL SxxxASFSNK GFTAKEMVTL SGSHTIGQAR CMTFRTRLYN ESNISPSFAM
SLKSNCPSSG GNNNLSPLNI TSPTFFDNAY FGNLVSQEGL LHSDQQLFSG GSTNAQVAAY SKNLGSFRND FADAMVKMGG LSPLTGSSGQ IRTNCRKVN
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Retrieve as FASTA
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Remarks |
Pseudogene sequence from NGS. End of Exon 1 is missing (No FHDC) |
DNA ►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCTTCCA ATACAAACCG GAAGATCTAC TTCGTCTTCT TTGTTTGTGC GATCGCGTTG AGGTCCGCCT TGGCGCAATT GTCTAACCAA GACTACTACA CGCAAAGGTG CCCGAGAGCA
CTGGAGACCA TCCAATCTGC TGTGAGATCG GCGGTGGCCA ACGAGACTCG CATGGGAGCA TCCTTGCTCC GACTTCACTT TCACGATTGC TTTGTCAATG CAAGTCTCTT CCGCTTTCTC
GCTCAGTTCT ATCCTTTTTC CTTCATGTCC AGTTTCGTGT ATGTTTTGCA TGTTCTTTTA CGTGCAAACT TTTACTTCAT TCCCAATCCA TATAAGGATT ACTCTTCCTC CACGTTTATT
TTCGATGGTT CCTCGCATGT CTGCTTAATT CACTCCTGAT TGAAAATGGC CAACATTTTG GAGATTCGGA TCTTTGAGGA ATATTGCAAC AAGTGAGCTA CGTGGGCCAA TGATTCCATT
AAATTAAGAA AGAACACGCA TTGAGCTGAT CATAGCACAC CATTTAGACG ACCTGCCAAT CTTGTGTCTC TGACTATGTC TTTTTTTCAT GCAATATAAA TTTGTCTCCA TATCTTATTC
TATTCTAACC GATGAATTTT CTCTCTTAAC GTTCCTTTCC GGTTGCTTGC AAAAnnAAAA AAATTATTTT GTTTCCTCAT AGGTTCAATA TTTAGATCAT CCTTTCTAGT TCGTTAGATC
TTCTAAACTT AATAAGnnnn nnnnnnnnnn nnATAGGGAT GTGATGCATC CATTCTACTA GATGACACCG TGAACTTCAC TGGGGAGAAG ACAGCGTTTC CCAACGTGAA CTCCGTGAGG
GGATTCGATG TGATTGACAC CATCAAGTTA AAAGTGGAGA AACTGTGTCC TGGCGTTGTC TCGTGCGCTG AYATCTTAGC CGTTGCTGCT AGGGACTCCG TCGTCATTGT AAGCATTGAY
ACTTGCAATT TCTTTAAACA TACAAAGAAA CTATTATTTT CCTAAACTTA TGTGGATTCA ATTAATTTGA TGTTTAGTTG GATGGnCCGA GTTGGCAAGT CCAACTGGGA AGAAGAGACT
CAACCACAGC GAGCCTAAAT GATGCTAATA TCGACCTCCC AGCTCCAACT CTTAATCTCA GCGnnnnnnn CGCCTCTTTC TCTAACAAAG GCTTTACTGC CAAAGAAATG GTAACACTAT
CAGGATCCCA CACCATAGGC CAGGCTAGGT GCATGACGTT TCGGACCCGA CTCTACAACG AGAGCAATAT AAGCCCGTCA TTCGCCATGT CTTTAAAGTC CAATTGCCCC AGCTCTGGAG
GCAACAACAA CCTATCCCCT CTCAACATCA CAAGCCCGAC GTTCTTTGAC AATGCCTACT TCGGCAACTT GGTGAGCCAA GAGGGCCTGC TTCATTCGGA TCAACAGTTG TTTAGTGGAG
GTTCGACGAA TGCTCAAGTG GCTGCCTACA GCAAAAATTT GGGTTCATTC AGGAATGATT TTGCCGATGC CATGGTCAAG ATGGGAGGCC TTAGTCCTCT TACCGGGTCT AGCGGTCAGA
TCAGGACCAA TTGCAGAAAA GTCAATTGA
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Retrieve as FASTA
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CDS►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCTTCCA ATACAAACCG GAAGATCTAC TTCGTCTTCT TTGTTTGTGC GATCGCGTTG AGGTCCGCCT TGGCGCAATT GTCTAACCAA GACTACTACA CGCAAAGGTG CCCGAGAGCA
CTGGAGACCA TCCAATCTGC TGTGAGATCG GCGGTGGCCA ACGAGACTCG CATGGGAGCA TCCTTGCTCC GACTTCACTT TCACGATTGC TTTGTCAATG CAAGTCTCTT CCGCTTTCTC
GCTCAGTTCT ATCCTTTTTC CTTCATGTCC AGTTTCGTGT ATGTTTTGCA TGGATGTGAT GCATCCATTC TACTAGATGA CACCGTGAAC TTCACTGGGG AGAAGACAGC GTTTCCCAAC
GTGAACTCCG TGAGGGGATT CGATGTGATT GACACCATCA AGTTAAAAGT GGAGAAACTG TGTCCTGGCG TTGTCTCGTG CGCTGACATC TTAGCCGTTG CTGCTAGGGA CTCCGTCGTC
ATT
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Retrieve as FASTA
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