Sequence Properties
first value : protein
second value (mature protein)
|
Length (aa):  |
264 |
| PWM (Da): |
27184.76 |
|
| PI (pH):
| 8.68 |
|
Sequence 308
Send to BLAST
Send to Peroxiscan
|
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
LDTIKCGMSSVVSSKARMGVPLLRLCFHDCFIHGLILLEYTANFIxxKNISPNANSIRVFEVIDMIKSQLESTxxKVLSYANTLVVTA*DSIVALSLGRRDSTSASQSAAISNIPAPSLNLNDLISSFxxxxxxxxEMAALLGHCLFFFTYRAQLYNNQHRICNITESKLSELRRRQQPLSS*RHEPDVLRQCLLKNLQIQKDLLNSN*QLFSGGAIDFQGNAYSSNSATFMTDFSNAMVKMGNLNPLTGSSSxxxxNYGKVNSCSF |
Retrieve as FASTA
|
|
| Remarks |
Pseudogene from NGS. 5' and PS are missing due to NNNN. Stops in frame. contig_98572 |
DNA ►
Send to BLAST
|
| .........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
CTCGACACCATTAAATGCGGCATGAGCTCCGTGGTCTCGAGCAAGGCGCGCATGGGTGTGCCGCTGCTCCGCCTTTGCTTCCACGATTGCTTCATCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCCAACCAACCACG
GAGTCAAAAGAATTATTAGATTCGCGTCTACACAAGTTAGGTAGGAGGTTCACATATTGAATTAGCTGAGTCTGACACCTTTTTGGTATTTTGTGGTGCCATGCATTTCTGTGAGTTTAT
TATATTATTAATAGATTTTTTTTGTTATAACAAAATAATTTTTTTGGTAAATGAAAAAAACTTTTTCATGAGTATCGTTAGTATATACGCTGCCGGCGTAAAAATTATTTTTTTTACAAA
CGGACTTATCCACCCTTAATTTGGCTGTTAGTGAGGGGTTTGGAATCTTCAAATCATGGATAAGAATGGTTATGTAAAGTTTTCTTTAGACCGATAGTGCACGCTTTAATTTTCTTATAT
TACAAAAACGATGTTGTCGATCAGATGTATATGTGATTAACTACCTGGTTTAAATCCAATGAACTCGATGAATTGGATCACGTAAAGTCCTGAACGTTGGAGCTTAAAAATGATATTTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGCAACCATTGAATTTAATGGACTCCAATCCCATCGATTTTCTATTTAGAAGGACTAAT
GTGTGGCGTAGATGCCACGGGTTGATTTTATTGGAGTACACCGCAAACTTCATTGNNNNNAAGAATATTAGCCCGAATGCCAATTCTATACGGGTATTCGAGGTGATTGATATGATCAAG
TCCCAATTAGAGAGCACNNNNNNNAAGGTCCTATCCTATGCCAACACATTGGTTGTTACTGCATGAGATTCCATCGTTGCCTTAAGTGCACATTTTCTTCTCAATTCTAGAGATCAATTG
TGAGGAGAAAAAAATCACATGTTGTGTTCTCCATGCTATATTAATACTAACACATATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGAAGGAG
AGACTCAACCAGCGCAAGCCAAAGTGCTGCTATTAGCAACATTCCTGCCCCAAGTTTGAACCTCAACGACCTCATCTCTTCCTTCTNNNNNNNNNNNNNNNNNNNNNAAGAAATGGCGGC
ACTCTTAGGTCATTGTCTTTTTTTTTTCACCTATTAAGAAAGAATTTATGATAATGCTCGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGCCCAACTTTACAATAATCAACACCGCATATGCAACATCACTGAAAGCAAACTGTCCGAGCTCCGTAGGCGACAACAACCCCTCTCC
TCTTGACGTCACGAGCCCGACGTCCTTCGACAATGCCTTCTCAAGAACTTGCAAATCCAAAAGGATCTTCTCAACTCGAACTAGCAATTGTTCAGTGGTGGTGCCATAGACTTTCAAGGG
AATGCTTATAGCAGCAATTCGGCAACTTTCATGACAGATTTTTCTAACGCTATGGTGAAGATGGGTAACCTCAACCCGCTCACGGGCTCAAGCAGTCANNNNNNNNAGAACTATGGAAAA
GTCAACTCATGTTCGTTC |
Retrieve as FASTA
|
|
CDS►
Send to BLAST
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| .........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
CTCGACACCATTAAATGCGGCATGAGCTCCGTGGTCTCGAGCAAGGCGCGCATGGGTGTGCCGCTGCTCCGCCTTTGCTTCCACGATTGCTTCATCCACGGGTTGATTTTATTGGAGTAC
ACCGCAAACTTCATTGNNNNNAAGAATATTAGCCCGAATGCCAATTCTATACGGGTATTCGAGGTGATTGATATGATCAAGTCCCAATTAGAGAGCACNNNNNNNAAGGTCCTATCCTAT
GCCAACACATTGGTTGTTACTGCATGAGATTCCATCGTTGCCTTAAGTCTTGGAAGGAGAGACTCAACCAGCGCAAGCCAAAGTGCTGCTATTAGCAACATTCCTGCCCCAAGTTTGAAC
CTCAACGACCTCATCTCTTCCTTCTNNNNNNNNNNNNNNNNNNNNNAAGAAATGGCGGCACTCTTAGGTCATTGTCTTTTTTTTTTCACCTATCGGGCCCAACTTTACAATAATCAACAC
CGCATATGCAACATCACTGAAAGCAAACTGTCCGAGCTCCGTAGGCGACAACAACCCCTCTCCTCTTGACGTCACGAGCCCGACGTCCTTCGACAATGCCTTCTCAAGAACTTGCAAATC
CAAAAGGATCTTCTCAACTCGAACTAGCAATTGTTCAGTGGTGGTGCCATAGACTTTCAAGGGAATGCTTATAGCAGCAATTCGGCAACTTTCATGACAGATTTTTCTAACGCTATGGTG
AAGATGGGTAACCTCAACCCGCTCACGGGCTCAAGCAGTCANNNNNNNNAGAACTATGGAAAAGTCAACTCATGTTCGTTC |
Retrieve as FASTA
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