Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
264 |
PWM (Da): |
27184.76 |
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PI (pH):
| 8.68 |
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Sequence 308
Send to BLAST
Send to Peroxiscan
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
LDTIKCGMSSVVSSKARMGVPLLRLCFHDCFIHGLILLEYTANFIxxKNISPNANSIRVFEVIDMIKSQLESTxxKVLSYANTLVVTA*DSIVALSLGRRDSTSASQSAAISNIPAPSLNLNDLISSFxxxxxxxxEMAALLGHCLFFFTYRAQLYNNQHRICNITESKLSELRRRQQPLSS*RHEPDVLRQCLLKNLQIQKDLLNSN*QLFSGGAIDFQGNAYSSNSATFMTDFSNAMVKMGNLNPLTGSSSxxxxNYGKVNSCSF |
Retrieve as FASTA
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Remarks |
Pseudogene from NGS. 5' and PS are missing due to NNNN. Stops in frame. contig_98572 |
DNA ►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
CTCGACACCATTAAATGCGGCATGAGCTCCGTGGTCTCGAGCAAGGCGCGCATGGGTGTGCCGCTGCTCCGCCTTTGCTTCCACGATTGCTTCATCNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCCAACCAACCACG GAGTCAAAAGAATTATTAGATTCGCGTCTACACAAGTTAGGTAGGAGGTTCACATATTGAATTAGCTGAGTCTGACACCTTTTTGGTATTTTGTGGTGCCATGCATTTCTGTGAGTTTAT TATATTATTAATAGATTTTTTTTGTTATAACAAAATAATTTTTTTGGTAAATGAAAAAAACTTTTTCATGAGTATCGTTAGTATATACGCTGCCGGCGTAAAAATTATTTTTTTTACAAA CGGACTTATCCACCCTTAATTTGGCTGTTAGTGAGGGGTTTGGAATCTTCAAATCATGGATAAGAATGGTTATGTAAAGTTTTCTTTAGACCGATAGTGCACGCTTTAATTTTCTTATAT TACAAAAACGATGTTGTCGATCAGATGTATATGTGATTAACTACCTGGTTTAAATCCAATGAACTCGATGAATTGGATCACGTAAAGTCCTGAACGTTGGAGCTTAAAAATGATATTTNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGCAACCATTGAATTTAATGGACTCCAATCCCATCGATTTTCTATTTAGAAGGACTAAT GTGTGGCGTAGATGCCACGGGTTGATTTTATTGGAGTACACCGCAAACTTCATTGNNNNNAAGAATATTAGCCCGAATGCCAATTCTATACGGGTATTCGAGGTGATTGATATGATCAAG TCCCAATTAGAGAGCACNNNNNNNAAGGTCCTATCCTATGCCAACACATTGGTTGTTACTGCATGAGATTCCATCGTTGCCTTAAGTGCACATTTTCTTCTCAATTCTAGAGATCAATTG TGAGGAGAAAAAAATCACATGTTGTGTTCTCCATGCTATATTAATACTAACACATATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGAAGGAG AGACTCAACCAGCGCAAGCCAAAGTGCTGCTATTAGCAACATTCCTGCCCCAAGTTTGAACCTCAACGACCTCATCTCTTCCTTCTNNNNNNNNNNNNNNNNNNNNNAAGAAATGGCGGC ACTCTTAGGTCATTGTCTTTTTTTTTTCACCTATTAAGAAAGAATTTATGATAATGCTCGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGCCCAACTTTACAATAATCAACACCGCATATGCAACATCACTGAAAGCAAACTGTCCGAGCTCCGTAGGCGACAACAACCCCTCTCC TCTTGACGTCACGAGCCCGACGTCCTTCGACAATGCCTTCTCAAGAACTTGCAAATCCAAAAGGATCTTCTCAACTCGAACTAGCAATTGTTCAGTGGTGGTGCCATAGACTTTCAAGGG AATGCTTATAGCAGCAATTCGGCAACTTTCATGACAGATTTTTCTAACGCTATGGTGAAGATGGGTAACCTCAACCCGCTCACGGGCTCAAGCAGTCANNNNNNNNAGAACTATGGAAAA GTCAACTCATGTTCGTTC |
Retrieve as FASTA
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CDS►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
CTCGACACCATTAAATGCGGCATGAGCTCCGTGGTCTCGAGCAAGGCGCGCATGGGTGTGCCGCTGCTCCGCCTTTGCTTCCACGATTGCTTCATCCACGGGTTGATTTTATTGGAGTAC ACCGCAAACTTCATTGNNNNNAAGAATATTAGCCCGAATGCCAATTCTATACGGGTATTCGAGGTGATTGATATGATCAAGTCCCAATTAGAGAGCACNNNNNNNAAGGTCCTATCCTAT GCCAACACATTGGTTGTTACTGCATGAGATTCCATCGTTGCCTTAAGTCTTGGAAGGAGAGACTCAACCAGCGCAAGCCAAAGTGCTGCTATTAGCAACATTCCTGCCCCAAGTTTGAAC CTCAACGACCTCATCTCTTCCTTCTNNNNNNNNNNNNNNNNNNNNNAAGAAATGGCGGCACTCTTAGGTCATTGTCTTTTTTTTTTCACCTATCGGGCCCAACTTTACAATAATCAACAC CGCATATGCAACATCACTGAAAGCAAACTGTCCGAGCTCCGTAGGCGACAACAACCCCTCTCCTCTTGACGTCACGAGCCCGACGTCCTTCGACAATGCCTTCTCAAGAACTTGCAAATC CAAAAGGATCTTCTCAACTCGAACTAGCAATTGTTCAGTGGTGGTGCCATAGACTTTCAAGGGAATGCTTATAGCAGCAATTCGGCAACTTTCATGACAGATTTTTCTAACGCTATGGTG AAGATGGGTAACCTCAACCCGCTCACGGGCTCAAGCAGTCANNNNNNNNAGAACTATGGAAAAGTCAACTCATGTTCGTTC |
Retrieve as FASTA
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