Sequence Properties
first value : protein second value (mature protein)
|
Length (aa): |
223 (763) |
PWM (Da): |
23026.26 (83712.4) |
|
PI (pH):
| 9.89 (7.45) |
Peptide Signal:
| cut: 19 range:19-781 |
|
Sequence 0
Send to BLAST
Send to Peroxiscan
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MAASLSISRL LTTTSTTKTA AAAAALLPRK SLSFTSLAVP RRSSLAVAVP RRPCKPLRLS TAATPARASI SVGDKLPDAT LSYFDPAGEL QTTTVSALTA GKKSILFAVP GAFTPTCSQK
HLPGFVEKAG ELKAKGVDTI ACVSVNDAFV MRAWKENLGI GDEVLLLSxG NGDFTRAIGC ELDLSDKPIG LGVRSRRYAL LAEDGVVKVL NLEEGGAFTF SSA
|
Retrieve as FASTA
|
|
Remarks |
Complete sequence from NGS and 1 EST. 3' end is mising due to NNNN. |
DNA ►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCAGCTT CTCTCTCCAT CTCCAGACTC CTCACCACCA CCTCCACCAC CAAAACCGCC GCCGCCGCCG CCGCCCTTCT CCCTCGCAAA TCCCTCTCCT TCACCTCCCT CGCCGTCCCC
CGCCGCTCCT CCCTCGCCGT CGCCGTCCCC CGCCGCCCCT GCAAGCCCCT CCGCCTCTCC ACCGCCGCCA CCCCCGCCCG CGCCTCCATC TCCGTTGGCG ACAAGCTCCC GGACGCCACC
CTCTCCTACT TCGACCCCGC CGGCGAGCTC CAGACCACCA CCGTCTCCGC CCTCACCGCC GGGAAGAAGT CGATCCTCTT CGCCGTCCCG GGGGCCTTCA CCCCGACCTG CTCCCAGAAG
CACCTCCCCG GGTTCGTGGA GAAGGCCGGG GAGCTGAAGG CGAAGGGGGT GGACACCATC GCCTGCGTCT CGGTGAACGA CGCCTTCGTG ATGCGGGCGT GGAAGGAGAA CCTGGGGATC
GGCGACGAGG TCCTGCTGCT GTCGGnCGGG AACGGGGACT TCACGAGGGC GATCGGGTGC GAGCTCGACC TGAGCGACAA GCCCATCGGG CTCGGGGTGC GGTCGCGGCG GTACGCGCTG
CTCGCGGAGG ACGGCGTCGT GAAGGTGCTC AACCTGGAGG AAGGCGGGGC CTTCACCTTC AGCAGTGCC
|
Retrieve as FASTA
|
|
CDS►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCAGCTT CTCTCTCCAT CTCCAGACTC CTCACCACCA CCTCCACCAC CAAAACCGCC GCCGCCGCCG CCGCCCTTCT CCCTCGCAAA TCCCTCTCCT TCACCTCCCT CGCCGTCCCC
CGCCGCTCCT CCCTCGCCGT CGCCGTCCCC CGCCGCCCCT GCAAGCCCCT CCGCCTCTCC ACCGCCGCCA CCCCCGCCCG CGCCTCCATC TCCGTTGGCG ACAAGCTCCC GGACGCCACC
CTCTCCTACT TCGACCCCGC CGGCGAGCTC CAGACCACCA CCGTCTCCGC CCTCACCGCC GGGAAGAAGT CGATCCTCTT CGCCGTCCCG GGGGCCTTCA CCCCGACCTG CTCCCAGAAG
CACCTCCCCG GGTTCGTGGA GAAGGCCGGG GAGCTGAAGG CGAAGGGGGT GGACACCATC GCCTGCGTCT CGGTGAACGA CGCCTTCGTG ATGCGGGCGT GGAAGGAGAA CCTGGGGATC
GGCGACGAGG TCCTGCTGCT GTCGGnCGGG AACGGGGACT TCACGAGGGC GATCGGGTGC GAGCTCGACC TGAGCGACAA GCCCATCGGG CTCGGGGTGC GGTCGCGGCG GTACGCGCTG
CTCGCGGAGG ACGGCGTCGT GAAGGTGCTC AACCTGGAGG AAGGCGGGGC CTTCACCTTC AGCAGTGCC
|
Retrieve as FASTA
|
|
cDNA►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
CCCGGGTCGA CCCACGCGTC CCGGCCCTTG TCTCTCTCTC TCTCTCTCTC TCTAGCAGCA GCAATGGCAG CTTCTCTCTC CATCTCCAGA CTCCTCACCA CCACCTCCAC CACCAAAACC
GCCGCCGCCG CCGCCGCCCT TCTCCCTCGC AAATCCCTCT CCTTCACCTC CCTCGCCGTC CCCCGCCGCT CCTCCCTCGC CGTCGCCGTC CCCCGCCGCC CCTGCAAGCC CCTCCGCCTC
TCCACCGCCG CCACCCCCGC CCGCGCCTCC ATCTCCGTTG GCGACAAGCT CCCGGACGCC ACCCTCTCCT ACTTCGACCC CGCCGGCGAG CTCCAGACCA CCACCGTCTC CGCCCTCACC
GCCGGGAAGA AGTCGATCCT CTTCGCCGTC CCGGGGGCCT TCACCCCGAC CTGCTCCCAG AAGCACCTCC CCGGGTTCGT GGAGAAGGCC GGGGAGCTGA AGGCGAAGGG GGTGGACACC
ATCGCCTGCG TCTCGGTGAA CGACGCCTTC GTGATGCGGG CGTGGAAGGA GAACCTGGGG ATCGGCGACG AGGTCCTGCT GCTGTCGGnC GGGAACGGGG ACTTCACGAG GGCGATCGGG
TGCGAGCTCG ACCTGAGCGA CAAGCCCATC GGGCTCGGGG TGCGGTCGCG GCGGTACGCG CTGCTCGCGG AGGACGGCGT CGTGAAGGTG CTCAACCTGG AGGAAGGCGG GGCCTTCACC
TTCAGCAGTG CC
|
Retrieve as FASTA
|
|