The peroxidases and oxidases database
Entry information : Vli2CysPrx (ycf42)
Entry ID 11143
Creation 2012-06-08 (Catherine Mathe)
Last sequence changes 2012-06-08 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-06-11 (Christophe Dunand)
Peroxidase information: Vli2CysPrx (ycf42)
Name (synonym) Vli2CysPrx (ycf42)
Class Typical 2-Cysteine peroxiredoxin    [Orthogroup: 2CysPrx001]
Taxonomy Eukaryota Xanthophyceae Vaucheriaceae Vaucheria
Organism Vaucheria litorea    [TaxId: 109269 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Vli2CysPrx
start..stop		 S start..stop
Py2CysPrx 295 3e-103 5..196 8..198
Ppur2CysPrx 288 2e-100 5..196 8..198
Acv2CysPrx 285 2e-98 1..196 79..274
Nt2CysPrx01-1A 285 2e-98 7..196 80..270
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 68881..69480 600  
complement(join(68881..69480))


exon

Literature and cross-references Vli2CysPrx (ycf42)
Literature Rumpho,M.E., Worful,J.M., Lee,J., Kannan,K., Tyler,M.S., Bhattacharya,D., Moustafa,A. and Manhart,J.R. Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica. Proc. Natl. Acad. Sci. U.S.A. 105 (46), 17867-17871 (2008)
Protein ref. GenPept:   YP_002327538.1
DNA ref. GenBank:   NC_011600.1 (69480..6888)
Protein sequence: Vli2CysPrx (ycf42)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   199
PWM (Da):   %s   22743.56  
PI (pH):   %s   4.43
Sequence 0
Send to BLAST
Send to Peroxiscan
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MEKQLRVGEL APPFEAVAVF NEEFDKVILS DYLHKKYVVL FFYPLNFTFV CPTEITTFSD NFDKFAELNT EVLGISVDSE YSHLAWLQTE REDGGLGNLN YPLLSDLTKE ISKSYNVLTD 
KGVALRGLFI IDMEGVIQHV TINNLEFGRN VEETLRVLQA IQHVQLNPEE VCPANWKPGE KTIIAETIKS KEYFSSHDF* 

Retrieve as FASTA  
Remarks Complete sequence coded on chloroplastic genome (no intron). No EST available.
DNA ►
Send to BLAST
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ATGGAAAAAC AACTTAGAGT AGGGGAATTA GCACCACCTT TTGAAGCTGT AGCAGTATTT AATGAAGAAT TTGATAAAGT TATTCTTTCA GATTATTTAC ATAAAAAATA TGTAGTTTTA  TTTTTTTATC CGTTAAATTT TACATTTGTA TGTCCTACAG AAATTACAAC TTTTAGTGAT AATTTTGATA AATTTGCTGA ATTAAATACT GAAGTTTTAG GTATTTCAGT AGATAGTGAG  TATTCTCATT TAGCTTGGTT ACAAACTGAA CGAGAAGATG GAGGATTAGG TAATTTAAAT TATCCTTTAT TATCGGATTT AACAAAAGAA ATAAGTAAAT CTTATAATGT TTTAACAGAT  AAAGGTGTAG CTTTACGTGG TTTATTTATT ATTGATATGG AAGGGGTTAT TCAACATGTT ACAATCAATA ATTTAGAATT TGGAAGAAAT GTTGAAGAAA CATTGCGTGT TCTTCAAGCA  ATCCAACATG TTCAACTTAA TCCTGAAGAA GTATGCCCAG CAAATTGGAA ACCGGGTGAA AAAACGATAA TTGCTGAAAC TATAAAATCA AAAGAATATT TTTCATCTCA TGATTTTTAA 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAAAAC AACTTAGAGT AGGGGAATTA GCACCACCTT TTGAAGCTGT AGCAGTATTT AATGAAGAAT TTGATAAAGT TATTCTTTCA GATTATTTAC ATAAAAAATA TGTAGTTTTA  TTTTTTTATC CGTTAAATTT TACATTTGTA TGTCCTACAG AAATTACAAC TTTTAGTGAT AATTTTGATA AATTTGCTGA ATTAAATACT GAAGTTTTAG GTATTTCAGT AGATAGTGAG  TATTCTCATT TAGCTTGGTT ACAAACTGAA CGAGAAGATG GAGGATTAGG TAATTTAAAT TATCCTTTAT TATCGGATTT AACAAAAGAA ATAAGTAAAT CTTATAATGT TTTAACAGAT  AAAGGTGTAG CTTTACGTGG TTTATTTATT ATTGATATGG AAGGGGTTAT TCAACATGTT ACAATCAATA ATTTAGAATT TGGAAGAAAT GTTGAAGAAA CATTGCGTGT TCTTCAAGCA  ATCCAACATG TTCAACTTAA TCCTGAAGAA GTATGCCCAG CAAATTGGAA ACCGGGTGAA AAAACGATAA TTGCTGAAAC TATAAAATCA AAAGAATATT TTTCATCTCA TGATTTTTAA 

Retrieve as FASTA