View Redoxidase 11201

Entry information : GbPrx10(gba_locus_10862_iso_2_len_1106_ver_2)

Entry ID	11201
Creation	2014-12-02 (Christophe Dunand)
Last sequence changes	2014-12-02 (Christophe Dunand)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2020-12-09 (Christophe Dunand)

Peroxidase information: GbPrx10(gba_locus_10862_iso_2_len_1106_ver_2)

Name

GbPrx10(gba_locus_10862_iso_2_len_1106_ver_2)

Class

Class III peroxidase [Orthogroup: Prx321]

Taxonomy

Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo

Organism

Ginkgo biloba [TaxId: 3311 ]

Cellular localisation

N/D

Tissue types

Leaves
Stems

Inducer

Lignification

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	GbPrx10 start..stop	S start..stop
GbPrx46	494	6.26e-178	19..327	21..329
PabPrx40	435	3.95e-154	10..327	13..328
GbPrx52	433	9.47e-154	1..327	1..327
PtaPrx145	429	2.42e-152	13..327	2..320

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '11201' 'join(1..213,303..494,650..815,911..1323)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1..213	211	N° 2	303..494	190	N° 3	650..815	164	N° 4	911..1323	411
join(1..213,303..494,650..815,911..1323)

Literature and cross-references GbPrx10(gba_locus_10862_iso_2_len_1106_ver_2)

Literature	Novo-Uzal,E. and Gutierrez,J. olecular cloning of two novel peroxidases and their response to salt stress and salicylic acid in the living fossil Ginkgo biloba. Ann. Bot. 114 (5), 923-936 (2014).
mRNA ref.	GenBank: KC164349.1

Protein sequence: GbPrx10(gba_locus_10862_iso_2_len_1106_ver_2)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	327 (303)
PWM (Da):	35238.62 (32546.2)
PI (pH):	8.2 (8.14)	Peptide Signal:	cut: 25 range:25-327

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MELTFAACFLTFLISFLCVKKTNAQLTPLYYQTSCPTAEAIIRPV
VQQAVQRDPRMAASLLRLHFHDCFVNGCDGSVLLDDTSTFTGEKSAGPNLNSLRGFEVIDNIKAAVEKSCNSVVSCADILAIAARDAVVLAGGPSWTPMLGRRDSRTASASTANTVMPAPNDTLGIIISKFRAVGLSVQDCVTLSG
AHTIGRARCSSFSARLYNFGNTGNPDPAINPFYLNTLRGICPRGGNANAVTSLDQRTPDRFDNSYFTNLRINEGLLQSDQELFSTTGASTTALVNLYSNNQIVFFQNFQNSMINMGNIKP
LTGNNGEIRTNCRKVN

Retrieve as FASTA

Remarks

Complete sequence from genomic (no prediction from SymDB, scaffold13419) and RNA seq (gba_locus_10862_iso_2_len_1106_ver_2).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGAGTTAACCTTTGCAGCTTGCTTTCTTACATTTCTCATATCCTTTTTATGTGTAAAGAAGACGAATGCTCAGCTAACTCCCCTTTACTACCAGACTTCTTGCCCAACCGCTGAAGCC
ATCATTCGACCAGTTGTTCAACAAGCTGTACAGAGAGACCCTCGAATGGCAGCCTCTCTTCTACGATTGCACTTTCATGATTGCTTCGTTAATATGTATGTATATTTTTTTAGTCATTCA
ATGTGTAAATCATTCAACTTAGCGTCTGCATTGCATTGAAGTAGAGTGTTTATGGTGAGTGCAGGGATGTGATGGATCAGTGTTGTTGGACGACACATCTACATTTACAGGAGAAAAATC
AGCTGGTCCAAACTTAAATTCACTCAGAGGATTTGAGGTCATTGATAACATCAAAGCAGCAGTAGAGAAGTCGTGTAATAGCGTAGTCTCTTGCGCAGACATTCTTGCTATTGCTGCGAG
GGACGCAGTTGTTCTCTCGTTCGTATAATAAGCATTTGTTCATTTCATTTCTGTTAACGGCTTTGATGTCTATTTATTTCAAATATAGAAAGATTGAGAGAGATTTAAGCTTAATAGTTT
GGGAGTAATGACGTGTGAAACGCTTAATATTAATACTGTTATAATTTATGTAGGCTGGAGGCCCGTCCTGGACTCCGATGTTAGGCAGAAGGGACAGCAGGACGGCAAGTGCAAGCACGG
CAAACACAGTCATGCCAGCTCCAAACGACACTCTGGGTATCATAATTTCCAAATTTCGAGCAGTGGGACTTTCCGTTCAAGATTGCGTTACATTATCAGAGGTATACGAAAAAAAAATCA
GCACACAATCCGAATTAGTATATATTGAGATATTGGGTCCAATGAATGCTTAATTTATTTCATTCAAAATGTGCAGGTGCTCATACAATTGGGCGCGCTCGCTGCAGCTCCTTCAGTGCT
CGCCTATATAACTTTGGCAACACGGGTAATCCAGACCCTGCCATCAACCCTTTCTATCTTAACACTTTACGGGGAATTTGCCCTCGGGGAGGTAACGCCAACGCTGTAACTTCACTTGAT
CAACGCACACCCGATCGCTTCGACAACAGCTATTTCACAAATTTGCGGATTAACGAAGGGCTCTTACAGTCGGATCAGGAACTCTTTTCGACCACTGGAGCATCTACAACAGCTCTCGTG
AATCTCTACAGTAATAACCAGATTGTTTTCTTTCAAAACTTCCAGAATTCCATGATAAACATGGGAAACATCAAGCCTCTCACGGGGAATAATGGAGAAATACGCACCAACTGCAGGAAA
GTGAACTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGAGTTAACCTTTGCAGCTTGCTTTCTTACATTTCTCATATCCTTTTTATGTGTAAAGAAGACGAATGCTCAGCTAACTCCCCTTTACTACCAGACTTCTTGCCCAACCGCTGAAGCC
ATCATTCGACCAGTTGTTCAACAAGCTGTACAGAGAGACCCTCGAATGGCAGCCTCTCTTCTACGATTGCACTTTCATGATTGCTTCGTTAATGGATGTGATGGATCAGTGTTGTTGGAC
GACACATCTACATTTACAGGAGAAAAATCAGCTGGTCCAAACTTAAATTCACTCAGAGGATTTGAGGTCATTGATAACATCAAAGCAGCAGTAGAGAAGTCGTGTAATAGCGTAGTCTCT
TGCGCAGACATTCTTGCTATTGCTGCGAGGGACGCAGTTGTTCTCGCTGGAGGCCCGTCCTGGACTCCGATGTTAGGCAGAAGGGACAGCAGGACGGCAAGTGCAAGCACGGCAAACACA
GTCATGCCAGCTCCAAACGACACTCTGGGTATCATAATTTCCAAATTTCGAGCAGTGGGACTTTCCGTTCAAGATTGCGTTACATTATCAGGTGCTCATACAATTGGGCGCGCTCGCTGC
AGCTCCTTCAGTGCTCGCCTATATAACTTTGGCAACACGGGTAATCCAGACCCTGCCATCAACCCTTTCTATCTTAACACTTTACGGGGAATTTGCCCTCGGGGAGGTAACGCCAACGCT
GTAACTTCACTTGATCAACGCACACCCGATCGCTTCGACAACAGCTATTTCACAAATTTGCGGATTAACGAAGGGCTCTTACAGTCGGATCAGGAACTCTTTTCGACCACTGGAGCATCT
ACAACAGCTCTCGTGAATCTCTACAGTAATAACCAGATTGTTTTCTTTCAAAACTTCCAGAATTCCATGATAAACATGGGAAACATCAAGCCTCTCACGGGGAATAATGGAGAAATACGC
ACCAACTGCAGGAAAGTGAACTAG

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ACGCGGGGGA TCACAGATTG AGATTCATAT GTGGAGTAAT GGAGTTAACC TTTGCAGCTT GCTTTCTTAC ATTTCTCATA TCCTTTTTAT GTGTAAAGAA GACGAATGCT CAGCTAACTC CCCTTTACTA CCAGACTTCT TGCCCAACCG CTGAAGCCAT CATTCGACCA GTTGTTCAAC AAGCTGTACA GAGAGACCCT CGAATGGCAG CCTCTCTTCT ACGATTGCAC TTTCATGATT GCTTCGTTAA TGGATGTGAT GGATCAGTGT TGTTGGACGA CACATCTACA TTTACAGGAG AAAAATCAGC TGGTCCAAAC TTAAATTCAC TCAGAGGATT TGAGGTCATT GATAACATCA AAGCAGCAGT AGAGAAGTCG TGTAATAGCG TAGTCTCTTG CGCAGACATT CTTGCTATTG CTGCGAGGGA CGCAGTTGTT CTCGCTGGAG GCCCGTCCTG GACTCCGATG TTAGGCAGAA GGGACAGCAG GACGGCAAGT GCAAGCACGG CAAACACAGT CATGCCAGCT CCAAACGACA CTCTGGGTAT CATAATTTCC AAATTTCGAG CAGTGGGACT TTCCGTTCAA GATTGCGTTA CATTATCAGG TGCTCATACA ATTGGGCGCG CTCGCTGCAG CTCCTTCAGT GCTCGCCTAT ATAACTTTGG CAACACGGGT AATCCAGACC CTGCCATCAA CCCTTTCTAT CTTAACACTT TACGGGGAAT TTGCCCTCGG GGAGGTAACG CCAACGCTGT AACTTCACTT GATCAACGCA CACCCGATCG CTTCGACAAC AGCTATTTCA CAAATTTGCG GATTAACGAA GGGCTCTTAC AGTCGGATCA GGAACTCTTT TCGACCACTG GAGCATCTAC AACAGCTCTC GTGAATCTCT ACAGTAATAA CCAGATTGTT TTCTTTCAAA ACTTCCAGAA TTCCATGATA AACATGGGAA ACATCAAGCC TCTCACGGGG AATAATGGAG AAATACGCAC CAACTGCAGG AAAGTGAACT AGTGAACATT AGATTTGCCC TTATAAAACG CTACTGCAAG TATTCTAATT TTTATTTAAT
GAATTAGTTT ATTTCAATGC TTAC

Retrieve as FASTA