Entry information : CroPrx30 (cra_locus_58150_iso_2_len_674_ver_3)
Entry ID 11288
Creation 2012-08-22 (Christophe Dunand)
Last sequence changes 2012-08-22 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2012-08-22 (Christophe Dunand)
Peroxidase information: CroPrx30 (cra_locus_58150_iso_2_len_674_ver_3)
Name (synonym) CroPrx30 (cra_locus_58150_iso_2_len_674_ver_3)
Class Class III peroxidase     [Orthogroup: Prx004]*
Taxonomy Eukaryota Viridiplantae Streptophyta Apocynaceae Catharanthus
Organism Catharanthus roseus    [TaxId: 4058 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CroPrx30
start..stop
S start..stop
StPrx10 363 1e-128 1..201 79..332
LePrx24 363 2e-128 1..201 79..332
LePrx70 363 2e-128 1..201 79..332
NtPrx35-1A 355 2e-125 1..199 79..330
Literature and cross-references CroPrx30 (cra_locus_58150_iso_2_len_674_ver_3)
Protein sequence: CroPrx30 (cra_locus_58150_iso_2_len_674_ver_3)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   201
PWM (Da):   %s   21681.08  
PI (pH):   %s   9.99
Sequence
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Send to Peroxiscan
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ASLLLDSSKG IVTEKGSNPN KNSARGFEVL DDIKSALEKE CPQTVSCADI LALAARDSTx ALSGSHTIGN SKCTSFRQRL YNQSGKNKPD STLDQSYAAQ LRNRCPKSGG DQNLFFLDFV 
SPTKFDNSYF KLLLASKGLL NSDQVLATKS RASLALVKQY AENNALFFDH FAKSMVKMGN ISPLTGSRGE IRKNCRKINS S 

Retrieve as FASTA  
Remarks Partial sequence from EST. 5'end and exon 3 are missing. Incorrect prediction (exon exon is missing: problem of assembly!!!)
CDS
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GCATCTTTGC TTCTGGATAG CAGCAAAGGA ATAGTAACAG AAAAGGGATC AAACCCCAAC AAGAATTCAG CTCGTGGATT TGAAGTCCTT GATGACATTA AATCTGCACT CGAGAAGGAA  TGTCCACAAA CTGTCTCTTG TGCTGATATC TTGGCACTTG CTGCAAGAGA TTCTACTnnn GCTTTATCTG GGAGCCACAC AATTGGAAAT TCAAAATGTA CCAGCTTCAG ACAAAGGCTC  TACAATCAGT CAGGAAAAAA TAAACCAGAC TCTACTCTGG ATCAATCATA TGCTGCCCAA TTGCGCAATA GGTGTCCAAA ATCTGGAGGC GATCAGAACC TATTTTTCTT GGACTTTGTT  TCCCCCACAA AATTTGATAA CAGCTACTTC AAGCTCTTGT TGGCTTCAAA GGGCCTTCTG AACTCTGACC AAGTTCTTGC TACTAAGAGT CGAGCATCAT TAGCTTTAGT GAAACAATAT  GCAGAGAACA ATGCCCTTTT CTTTGATCAC TTCGCCAAGT CTATGGTTAA GATGGGGAAC ATTTCTCCTT TGACTGGTTC CAGAGGGGAG ATCAGGAAGA ATTGCAGGAA GATCAACTCA 
TCTTAA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TGCATCTTTG CTTCTGGATA GCAGCAAAGG AATAGTAACA GAAAAGGGAT CAAACCCCAA CAAGAATTCA GCTCGTGGAT TTGAAGTCCT TGATGACATT AAATCTGCAC TCGAGAAGGA  ATGTCCACAA ACTGTCTCTT GTGCTGATAT CTTGGCACTT GCTGCAAGAG ATTCTACTnn nGCTTTATCT GGGAGCCACA CAATTGGAAA TTCAAAATGT ACCAGCTTCA GACAAAGGCT  CTACAATCAG TCAGGAAAAA ATAAACCAGA CTCTACTCTG GATCAATCAT ATGCTGCCCA ATTGCGCAAT AGGTGTCCAA AATCTGGAGG CGATCAGAAC CTATTTTTCT TGGACTTTGT  TTCCCCCACA AAATTTGATA ACAGCTACTT CAAGCTCTTG TTGGCTTCAA AGGGCCTTCT GAACTCTGAC CAAGTTCTTG CTACTAAGAG TCGAGCATCA TTAGCTTTAG TGAAACAATA  TGCAGAGAAC AATGCCCTTT TCTTTGATCA CTTCGCCAAG TCTATGGTTA AGATGGGGAA CATTTCTCCT TTGACTGGTT CCAGAGGGGA GATCAGGAAG AATTGCAGGA AGATCAACTC 
ATCTTAAGAG AGCACATTAC CTCCATTACA GCAGCAGACC AATACTTGTG CCTCTATTGT TAGTTTGTTA CGT 

Retrieve as FASTA