View Redoxidase 113

Entry information : LuPrx03 (FLXPER3|Lus10028735|PACid:23164544)

Entry ID	113
Creation	2006-06-19 (Christophe Dunand)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2014-03-19 (Christophe Dunand)

Peroxidase information: LuPrx03 (FLXPER3|Lus10028735|PACid:23164544)

Name (synonym)

LuPrx03 (FLXPER3|Lus10028735|PACid:23164544)

Class

Class III peroxidase [Orthogroup: Prx005]

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

Cell wall

Tissue types

Leaves
Seedlings
Stems

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuPrx03 start..stop	S start..stop
LuPrx156	714	0	1..357	1..357
PtPrx67	501	5.42e-180	8..356	11..353
NnPrx26	499	4.25e-179	29..344	37..350
BvPrx25	492	3.28e-176	5..348	2..343

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1126241..1126480	238	N° 2	1125360..1125557	196	N° 3	1124865..1125260	394	N° 4	1124261..1124500	238
complement(join(1124261..1124500,1124865..1125260,1125360..1125557,1126241..1126 480))

Literature and cross-references LuPrx03 (FLXPER3|Lus10028735|PACid:23164544)

Literature	Day A, FÃ©nart S, Neutelings G, Hawkins S, Rolando C, Tokarski C. Identification of cell wall proteins in the flax (Linum usitatissimum) stem. Proteomics. 2013 13(5):812-25.
Protein ref.	UniProtKB: Q43782
DNA ref.	Phytozome 12: scaffold346 (1126480..1124261)
mRNA ref.	GenBank: U59284

Protein sequence: LuPrx03 (FLXPER3|Lus10028735|PACid:23164544)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	357 (331)
PWM (Da):	38241.47 (35670.1)	Transmb domain:	i7-29o
PI (pH):	7.74 (7.72)	Peptide Signal:	cut: 27 range:27-357

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAPTSSHVVALTIMLSAVLFASTATAQIPAPAKGMSWTFYKSSCP
KLESIITKRLKEVFKKDIGQAAGLLRLHFHDCFVEGCDGSVLLTGSAGGPSAEQGSPPNLSLRKEAFRIIDDLRARVHKECGRVVSCSDIVAIAARDSVVLSGGPKYQVALGRRDGTTLVTQDTTLANLPPPFATTGTILSSLATKNLNPTDAVA
LSGAHTIGISHCSSFTDRLYPNQDPSMDQTFAKNLKATCPQAATTDNIVNQDIRSPNVFDNKYYVDLMNRQGLFTSDQDLYTDSRTRGIVTSFAINQTLFFEKFVVAMIKMGQISVLTGK
QGEIRANCSLTNSAKVQTSSFLEEAVEEAVELLAGMR*

Retrieve as FASTA

Remarks

Complete sequence from genomic and 2 ESTs. Experimental evidency of cell wall localization. Cultivar="Stormont cirrus".

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTCCCACTTCTTCCCATGTCGTCGCTCTAACGATCATGTTGTCGGCGGTGTTGTTCGCATCCACGGCGACGGCTCAGATTCCGGCGCCGGCGAAAGGAATGTCGTGGACTTTCTAC
AAGTCCTCCTGCCCCAAGCTCGAGTCCATCATCACTAAGCGCCTCAAGGAAGTGTTCAAGAAGGACATCGGCCAGGCCGCAGGCTTGCTCCGCCTCCACTTCCATGACTGCTTCGTCGAG
GTACACATAAAATTTCGTCACTTTGGAATCAGGAAATCTTGTCATCTAAGTTCGTCTACTCTTGATTTCGCCATTTTTTGCTGGCTAAGAGCCCTGATTACTCATAATGATTCCTGATTC
CGCCATTTGTTGCTGACTAAGAGCCATGATTACTCATAATTACTAGCTTCTAGTGTAGATGGATTTTTATTTTTAACTGGGTTGTTGAAAATTCAAAAATATAATTTTTTTCTCTCTTGT
AGCTAGAATTATTAAATGTGGGGTTGTTGTACTATTACTAGTATTATTGTGTCAAATATTATTCAAATGTGACATATCAAGAATTTAGTGGAATGAATGATTAGGATTTTCTAATTTGAG
TTTTCATAGTCGAGCTGGTAATTAAATTAGGTAATATATCATATATTAGATGTATTGAATTTGAATAATATTTTTTGTGAAATGGTTGGTACTCGTGTGGACGTTTTAGATGGCCACTCG
TGTATGTGCTTCGTTATTCATGTTCGGAGCATTAAAATTAGTTAATTATTTGATATGGAAACATCAATAATTCATATAGTTCCATACAACCACCAAGTTATGGAGAAATAAATTCTATGG
ATGGTGAAGGAAATCTGGCTATGGATATTTTGTTGTATGGGAAATCAAAATAATTTTATTTTATTTATTATAATTATTTTCAGGGGGATGTGATGGATCGGTGTTGCTGACTGGATCGGC
AGGTGGGCCCAGCGCGGAGCAAGGGTCCCCACCTAACTTGAGCCTGAGGAAAGAAGCCTTCCGAATCATCGACGACCTCCGTGCACGTGTCCACAAGGAGTGCGGCCGCGTCGTCTCTTG
CTCCGACATTGTCGCTATAGCTGCCCGTGACTCCGTCGTCCTGGTAAAATCGAGTCGAACGAATTTGGTTAGATAGAATTTATCGATTTCCTTTCCGGTTTAATTTAATGTAACTAATGT
GTGTATTTTTTTTATTCCATAGTCTCTGGTGGGCCAAAGTACCAAGTGGCGTTAGGCCGCCGCGACGGTACAACGTTAGTAACACAAGACACCACCTTGGCCAACCTCCCGCCCCCGTTT
GCCACTACGGGAACCATCCTGAGCTCCCTCGCCACCAAGAACCTCAACCCGACCGACGCGGTCGCACTGTCTGGGGCCCACACCATCGGGATCAGCCACTGCTCCTCCTTCACCGACCGC
CTCTACCCTAACCAGGATCCCTCCATGGACCAGACCTTCGCCAAAAACCTCAAGGCCACGTGTCCTCAGGCTGCCACGACCGACAACATTGTCAACCAGGACATTCGGTCCCCGAACGTG
TTCGACAACAAGTATTATGTTGACTTGATGAACCGACAGGGCCTCTTCACCTCCGACCAGGTATGGTTTGGTTCCTATTCGGATATTTGATATTAGTTTATAAATATTCTAATTAATTTG
AAGGACAGAAGAATTATTTATTCAAGTATTTTTCAAACATTTAAACTTTATGAATCATTAATAAAGCTTTCTCAAGTTATGCAACTTAACCTTTTTATTTCATACTTCATAACTACAAAA
TAAAACAAACTATTCTAAATATAAAATATCTTGTCACAAAAATATTTTCAATCGAAATTTAATTGACTTATCAACTTCGGGTATAGTTTTTGAATGAATACTTCAATATTTATTCCCTAC
CTCGTACATAAACTTTTTTGAGTAACCATAACTAACGGTTTATAATTGCAATCTCTACGACCAGGAGACTTATACACCGACTCGCGAACCCGTGGGATTGTTACAAGTTTCGCGATCAAC
CAGACCCTGTTTTTCGAGAAGTTTGTCGTGGCTATGATCAAGATGGGGCAGATAAGCGTGTTGACCGGTAAACAAGGGGAGATCAGAGCTAACTGTTCGCTAACGAACTCCGCGAAGGTA
CAAACGTCTTCGTTCTTGGAGGAAGCTGTGGAGGAGGCTGTCGAGCTTTTGGCTGGGATGAGATAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA