Entry information : CroPrx43 (cra_locus_55851_iso_1_len_605_ver_3)
Entry ID 11308
Creation 2012-09-13 (Christophe Dunand)
Last sequence changes 2012-09-13 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2012-09-13 (Christophe Dunand)
Peroxidase information: CroPrx43 (cra_locus_55851_iso_1_len_605_ver_3)
Name (synonym) CroPrx43 (cra_locus_55851_iso_1_len_605_ver_3)
Class Class III peroxidase     [Orthogroup: Prx016]*
Taxonomy Eukaryota Viridiplantae Streptophyta Apocynaceae Catharanthus
Organism Catharanthus roseus    [TaxId: 4058 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CroPrx43
start..stop
S start..stop
LePrx95 508 0 1..265 50..314
NtPrx34-1B 502 0 1..265 53..318
NtPrx34-1A 501 0 1..265 53..318
MtPrx08 464 1e-167 1..265 51..316
Literature and cross-references CroPrx43 (cra_locus_55851_iso_1_len_605_ver_3)
Protein sequence: CroPrx43 (cra_locus_55851_iso_1_len_605_ver_3)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   265
PWM (Da):   %s   28423.3  
PI (pH):   %s   8.91
Sequence
Send to BLAST
Send to Peroxiscan
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KTVPAALLRM HFHDCFIRGC DASVLLNSKM NTAEKDGPPN VSLHAFFVID NAKKATEALC PGIVSCADIL AFAARDSVVI SGGPSWDVPK GRKDGRTSKA SETRQLPAPT FNISQLQQSF  AQRGLSLEDL VALSGGHTLG FSHCSSFNNR IHNFNTTHDV DPTLHPSLAA TLKGICPLKN RAKNAGTAMD PSSTTFDNTY YKSILQNTSL FSSDQALLSI PKTKALVSEF ASSQEAFFKA 
FANSMIKMSS INGGQEVRKD CRVAN 

Retrieve as FASTA  
Remarks Partial sequence from two contig (short overlap of 26 nt but help of the close ortholg from Nt). Short 5' end is missing.
CDS
Send to BLAST
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AAAACTGTCC CTGCTGCCCT TCTAAGGATG CATTTCCATG ACTGTTTCAT AAGGGGGTGC GATGCTTCGG TGTTACTAAA CTCCAAGATG AACACTGCAG AAAAAGATGG TCCTCCTAAT  GTTTCTTTGC ATGCATTCTT TGTTATTGAT AATGCAAAGA AAGCCACTGA AGCCCTTTGC CCTGGCATAG TTTCCTGTGC TGATATCTTA GCCTTTGCTG CCAGAGATTC TGTTGTCATT  TCTGGCGGAC CTTCCTGGGA CGTGCCTAAA GGAAGAAAAG ATGGAAGAAC ATCAAAAGCT AGTGAAACTA GACAATTGCC AGCTCCCACT TTTAACATAT CTCAACTTCA ACAAAGCTTC  GCTCAAAGAG GATTATCACT AGAAGACCTT GTCGCTCTCT CAGGTGGACA CACCTTAGGT TTCTCTCATT GTTCATCTTT CAACAACAGG ATACACAACT TCAATACAAC CCATGATGTC  GACCCAACGT TACATCCATC TTTGGCTGCA ACTTTAAAGG GCATTTGTCC ACTCAAAAAC AGAGCAAAAA ATGCTGGAAC TGCCATGGAT CCTTCCTCAA CGACATTCGA CAATACATAT  TACAAGTCAA TTCTGCAGAA CACGAGCCTT TTCTCTTCAG ACCAAGCTTT GCTCAGCATT CCTAAGACTA AAGCTCTGGT TTCTGAATTT GCTAGCTCAC AAGAAGCTTT CTTTAAGGCT 
TTTGCTAATT CCATGATCAA AATGAGCAGC ATAAATGGAG GCCAAGAGGT CAGAAAGGAT TGTAGGGTAG CTAATTGA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AAAACTGTCC CTGCTGCCCT TCTAAGGATG CATTTCCATG ACTGTTTCAT AAGGGGGTGC GATGCTTCGG TGTTACTAAA CTCCAAGATG AACACTGCAG AAAAAGATGG TCCTCCTAAT  GTTTCTTTGC ATGCATTCTT TGTTATTGAT AATGCAAAGA AAGCCACTGA AGCCCTTTGC CCTGGCATAG TTTCCTGTGC TGATATCTTA GCCTTTGCTG CCAGAGATTC TGTTGTCATT  TCTGGCGGAC CTTCCTGGGA CGTGCCTAAA GGAAGAAAAG ATGGAAGAAC ATCAAAAGCT AGTGAAACTA GACAATTGCC AGCTCCCACT TTTAACATAT CTCAACTTCA ACAAAGCTTC  GCTCAAAGAG GATTATCACT AGAAGACCTT GTCGCTCTCT CAGGTGGACA CACCTTAGGT TTCTCTCATT GTTCATCTTT CAACAACAGG ATACACAACT TCAATACAAC CCATGATGTC  GACCCAACGT TACATCCATC TTTGGCTGCA ACTTTAAAGG GCATTTGTCC ACTCAAAAAC AGAGCAAAAA ATGCTGGAAC TGCCATGGAT CCTTCCTCAA CGACATTCGA CAATACATAT  TACAAGTCAA TTCTGCAGAA CACGAGCCTT TTCTCTTCAG ACCAAGCTTT GCTCAGCATT CCTAAGACTA AAGCTCTGGT TTCTGAATTT GCTAGCTCAC AAGAAGCTTT CTTTAAGGCT  TTTGCTAATT CCATGATCAA AATGAGCAGC ATAAATGGAG GCCAAGAGGT CAGAAAGGAT TGTAGGGTAG CTAATTGATT ATTAATCCTT CCAAATTAAT GATAATCCAG AGTGCAGTGT 
GTCTCCATTT GTTTCCTTTA TAT 

Retrieve as FASTA